Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400049176 | Potato | cytosol | 24.9 | 64.12 |
| Solyc04g010080.2.1 | Tomato | cytosol | 56.13 | 59.67 |
| KRG94883 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 56.52 | 59.11 |
| CDY42929 | Canola | plasma membrane | 53.03 | 57.89 |
| PGSC0003DMT400029925 | Potato | plasma membrane | 56.26 | 57.6 |
| Bra001106.1-P | Field mustard | plasma membrane | 53.03 | 57.16 |
| CDX74189 | Canola | plasma membrane | 53.03 | 57.08 |
| CDY49334 | Canola | plasma membrane | 52.13 | 56.66 |
| Bra040191.1-P | Field mustard | plasma membrane | 51.87 | 56.46 |
| AT3G04480.1 | Thale cress | plasma membrane | 52.26 | 56.41 |
| CDX92070 | Canola | plasma membrane | 52.26 | 56.02 |
| CDY20689 | Canola | extracellular | 8.13 | 38.89 |
| VIT_14s0036g00840.t01 | Wine grape | cytosol | 2.58 | 25.97 |
Protein Annotations
| MapMan:17.5.2.2.6 | Gene3D:3.30.1330.40 | Gene3D:3.40.50.620 | Gene3D:3.90.1490.10 | EMBL:AM484107 | ProteinID:CAN66414 |
| ProteinID:CAN66414.1 | ProteinID:CCB47641 | ProteinID:CCB47641.1 | InterPro:DPH6/MJ0570 | InterPro:Diphthami_syn_dom | UniProt:F6H602 |
| EMBL:FN595241 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005096 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008171 | GO:GO:0009987 |
| GO:GO:0015074 | GO:GO:0016740 | GO:GO:0030234 | GO:GO:0032259 | GO:GO:0043547 | InterPro:IPR014729 |
| InterPro:IPR035959 | PFAM:PF01042 | PFAM:PF01902 | PANTHER:PTHR12196 | InterPro:Rossmann-like_a/b/a_fold | InterPro:RutC-like_sf |
| SUPFAM:SSF52402 | SUPFAM:SSF55298 | TIGR:TC51850 | TIGRFAMs:TIGR00290 | UniParc:UPI0002108CF9 | ArrayExpress:VIT_14s0036g00850 |
| EnsemblPlantsGene:VIT_14s0036g00850 | EnsemblPlants:VIT_14s0036g00850.t01 | unigene:Vvi.6726 | RefSeq:XP_002268271 | RefSeq:XP_002268271.1 | InterPro:YjgF/YER057c/UK114 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr14:+:11072432..11107892
Molecular Weight (calculated)
86424.8 Da
IEP (calculated)
6.378
GRAVY (calculated)
-0.018
Length
775 amino acids
Sequence
(BLAST)
(BLAST)
001: MNLVKGKKTI GCKWIFTTKN RPDGSLKRYK AHLVPKEVTQ AGSIVDGRST TGYHTFPGGN LIMWRSKNQA VVACSRAEAK FRAMTHAICE LLWIKSILAD
101: FTIEVRKHVL WHQNLSYRMT QGDEVEDMSI LLEEVKRQIP SITAVSSGAI ASDYQRFRVE NVCSRLGLVS LAYLWKQDQS LLLQEMVTNG IVAITVKVAA
201: MGLDPAKHLG KEIMNLQSYL HKLNKLYGIN VCGEGGEYET LTLDCPLFGN ARIVLDEFQV VLHSSDSIAP VGILHPLAFH LENKVESISL SATNGTNDAC
301: LEKIDSVCEV QGDCLRRCAA KGESVDAASD LDDVIEHRLL ISKTRKDNLF SMCCWLQDSS KTSSGLQEDM KAVLKKIESQ LMEYGFGWEN VLYIHLYISD
401: MNEFALANEI YVKYITQEKC PLGVPSRSTI ELPLLQVGLG GAYVEVLVTT DQSKRVLHVQ SISCWAPSCI GPYSQATLHK GILHMAGQLG LDPPTMNLCS
501: GGPTVELEQA LINSDAVAKC FNCSVSNAAI IFVIYCSTRI PPSERIGVQD KLDTVLKQMR LFQENKGCLS NVLYPILLYV LVPDLPKRAL VEVKPVLYVE
601: DDMKTTETTV EDMSFTIAPN HWDFQEASWH DTCIQKSVIP GKICVIVLSV TNELAMKVCS ESPGCNRNNQ DHRFGNEQID RITRFCIYLL DKVLAGNGFS
701: WEDITNLKFY FPTSLCMPLE TLSLMFTNAF NEFAEMSQRI KIGKEPIFNL IPVLGAGKTS SMDDIITCEL FSQKH
101: FTIEVRKHVL WHQNLSYRMT QGDEVEDMSI LLEEVKRQIP SITAVSSGAI ASDYQRFRVE NVCSRLGLVS LAYLWKQDQS LLLQEMVTNG IVAITVKVAA
201: MGLDPAKHLG KEIMNLQSYL HKLNKLYGIN VCGEGGEYET LTLDCPLFGN ARIVLDEFQV VLHSSDSIAP VGILHPLAFH LENKVESISL SATNGTNDAC
301: LEKIDSVCEV QGDCLRRCAA KGESVDAASD LDDVIEHRLL ISKTRKDNLF SMCCWLQDSS KTSSGLQEDM KAVLKKIESQ LMEYGFGWEN VLYIHLYISD
401: MNEFALANEI YVKYITQEKC PLGVPSRSTI ELPLLQVGLG GAYVEVLVTT DQSKRVLHVQ SISCWAPSCI GPYSQATLHK GILHMAGQLG LDPPTMNLCS
501: GGPTVELEQA LINSDAVAKC FNCSVSNAAI IFVIYCSTRI PPSERIGVQD KLDTVLKQMR LFQENKGCLS NVLYPILLYV LVPDLPKRAL VEVKPVLYVE
601: DDMKTTETTV EDMSFTIAPN HWDFQEASWH DTCIQKSVIP GKICVIVLSV TNELAMKVCS ESPGCNRNNQ DHRFGNEQID RITRFCIYLL DKVLAGNGFS
701: WEDITNLKFY FPTSLCMPLE TLSLMFTNAF NEFAEMSQRI KIGKEPIFNL IPVLGAGKTS SMDDIITCEL FSQKH
001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
Arabidopsis Description
Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.