CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04480.1	CDX70151	AT5G05410.1	18552202
AT3G04480.1	CDX98843	AT5G05410.1	18552202
AT3G04480.1	CDY04950	AT5G05410.1	18552202
AT3G04480.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0036g00840.t01	Wine grape	cytosol	32.72	68.83
Bra040191.1-P	Field mustard	plasma membrane	88.27	20.08
CDY42929	Canola	plasma membrane	87.04	19.86
CDY49334	Canola	plasma membrane	84.57	19.21
CDX74189	Canola	plasma membrane	83.95	18.89
CDX92070	Canola	plasma membrane	82.72	18.53
AT3G04480.1	Thale cress	plasma membrane	80.25	18.11
KRG94883	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole	56.79	12.42
Solyc04g010080.2.1	Tomato	cytosol	55.56	12.35
PGSC0003DMT400029925	Potato	plasma membrane	56.79	12.15
GSMUA_Achr10P...	Banana	peroxisome	51.85	11.76
TraesCS6D01G362600.1	Wheat	peroxisome	39.51	8.71
KXG31325	Sorghum	cytosol, nucleus, peroxisome	38.27	8.5
TraesCS6B01G415800.1	Wheat	peroxisome	38.27	8.5
Os02t0810450-01	Rice	cytosol, nucleus, peroxisome	37.65	8.32
HORVU6Hr1G088800.8	Barley	peroxisome	37.65	8.3
TraesCS6A01G378100.1	Wheat	peroxisome	37.04	8.16
VIT_14s0036g00850.t01	Wine grape	mitochondrion	38.89	8.13
Zm00001d018439_P003	Maize	cytosol	34.57	7.37
PGSC0003DMT400049176	Potato	cytosol	5.56	2.99

Protein Annotations

EnsemblPlants:CDY20689	EnsemblPlantsGene:GSBRNA2T00012877001	Gene3D:3.40.50.620	InterPro:DPH6/MJ0570	InterPro:Diphthami_syn_dom	InterPro:IPR014729
InterPro:Rossmann-like_a/b/a_fold	MetaCyc:PWY-6482	MetaCyc:PWY-7546	PANTHER:PTHR12196	PFAM:PF01902	ProteinID:CDY20689
ProteinID:CDY20689.1	SEG:seg	SUPFAM:SSF52402	UniParc:UPI0004EF3751	UniPathway:UPA00559	UniProt:A0A078G5P5
MapMan:35.2	:	:	:	:	:

Description

BnaC08g13690DBnaC08g13690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5P5]

Coordinates

chrLK032110:-:659082..661271

Molecular Weight (calculated)

18120.9 Da

IEP (calculated)

7.961

GRAVY (calculated)

0.031

Length

162 amino acids

Sequence
(BLAST)

001: MKVVALVSGG KDSCYVMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQIIRVTR FCVYLLNKTL SENSFSWKDT TSLRIHFSTS LGVSVKRLFN
101: IFETAFKELN EMSPEGINLH SILSKKKKNN NNTFNLVPVL GAGNSSASLD NIITCELFSL RS

Best Arabidopsis Sequence Match ( AT3G04480.1 )
(BLAST)

001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS

Arabidopsis Description

Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.