Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04480.1 | CDX70151 | AT5G05410.1 | 18552202 |
| AT3G04480.1 | CDX98843 | AT5G05410.1 | 18552202 |
| AT3G04480.1 | CDY04950 | AT5G05410.1 | 18552202 |
| AT3G04480.1 | CDY52149 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74189 | Canola | plasma membrane | 92.95 | 93.33 |
| VIT_14s0036g00840.t01 | Wine grape | cytosol | 9.68 | 90.91 |
| CDY42929 | Canola | plasma membrane | 86.58 | 88.17 |
| CDY49334 | Canola | plasma membrane | 86.72 | 87.94 |
| AT3G04480.1 | Thale cress | plasma membrane | 85.2 | 85.79 |
| CDY20689 | Canola | extracellular | 18.53 | 82.72 |
| PGSC0003DMT400049176 | Potato | cytosol | 27.39 | 65.78 |
| Solyc04g010080.2.1 | Tomato | cytosol | 62.1 | 61.59 |
| PGSC0003DMT400029925 | Potato | plasma membrane | 61.83 | 59.05 |
| KRG94883 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, vacuole | 60.44 | 58.97 |
| GSMUA_Achr10P... | Banana | peroxisome | 57.26 | 57.98 |
| Os02t0810450-01 | Rice | cytosol, nucleus, peroxisome | 54.36 | 53.62 |
| TraesCS6D01G362600.1 | Wheat | peroxisome | 53.53 | 52.65 |
| TraesCS6B01G415800.1 | Wheat | peroxisome | 52.84 | 52.4 |
| VIT_14s0036g00850.t01 | Wine grape | mitochondrion | 56.02 | 52.26 |
| HORVU6Hr1G088800.8 | Barley | peroxisome | 53.11 | 52.24 |
| KXG31325 | Sorghum | cytosol, nucleus, peroxisome | 52.42 | 51.99 |
| TraesCS6A01G378100.1 | Wheat | peroxisome | 52.14 | 51.29 |
| Zm00001d018439_P003 | Maize | cytosol | 49.1 | 46.71 |
Protein Annotations
| MapMan:17.5.2.2.6 | Gene3D:3.30.1330.40 | Gene3D:3.40.50.620 | Gene3D:3.90.1490.10 | EnsemblPlants:CDX92070 | ProteinID:CDX92070 |
| ProteinID:CDX92070.1 | InterPro:DPH6/MJ0570 | InterPro:Diphthami_syn_dom | EnsemblPlantsGene:GSBRNA2T00153742001 | InterPro:IPR014729 | InterPro:IPR035959 |
| PFAM:PF01042 | PFAM:PF01902 | PANTHER:PTHR12196 | MetaCyc:PWY-6482 | MetaCyc:PWY-7546 | InterPro:Rossmann-like_a/b/a_fold |
| InterPro:RutC-like_sf | SUPFAM:SSF52402 | SUPFAM:SSF55298 | TIGRFAMs:TIGR00290 | UniPathway:UPA00559 | UniParc:UPI0004EF17B3 |
| InterPro:YjgF/YER057c/UK114 | : | : | : | : | : |
Description
BnaC03g33720D
Coordinates
chrLK031870:-:1523031..1526288
Molecular Weight (calculated)
79975.6 Da
IEP (calculated)
4.981
GRAVY (calculated)
-0.104
Length
723 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVVALVSGG KDSCYVMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQIIVSYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTSLLQ EMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPHLLKLK ELYGSNVCGE
201: GGEYETLTLD CPLFTRARIV LDEFEVKLHS PDSIAPVGVL HPTVFHLEKK GNADSSSLEE EPGLVFEVQG DGPNPPESTR QLDNGIADVV GQTRTRVNLS
301: KTGKDNTFSI CCWLEDSSES STGLKEDLET VLTEIESQLS KHGVSWQNVL YIHLYISDMS EFAVANETYV RFITQEKCPF GVPSRSTIAL PLVQAGLGKA
401: YVEVLVANDH SKRVLHVQSI SSWAPSCIGP YSQATLHKGV LHMAGHLGLD PPTMNLRKEG AVAELNQALT NSEAIAEAFR CSISSSAILF VVFCSARTKE
501: SERNQLHEQF VSFLDLAKSS RRVANVIDPI FLYILVPDLP KSALVEVKPV LYVEEDEKTD DETRQGQLGE GDYSCWGYKP EKWHQDCLQT RVIDGKICLN
601: VLSISAEVMR KLDEPSGDEE EQLKRVSRFC VNPLNKTLSE NSFSWQDTTS LRIHFSTSLG VSVERLSDIF ETAFKVLNEM SGGGVAFNGL KEPIFNLVPV
701: LGAGNTSASL DNIITCELFS LRS
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTSLLQ EMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPHLLKLK ELYGSNVCGE
201: GGEYETLTLD CPLFTRARIV LDEFEVKLHS PDSIAPVGVL HPTVFHLEKK GNADSSSLEE EPGLVFEVQG DGPNPPESTR QLDNGIADVV GQTRTRVNLS
301: KTGKDNTFSI CCWLEDSSES STGLKEDLET VLTEIESQLS KHGVSWQNVL YIHLYISDMS EFAVANETYV RFITQEKCPF GVPSRSTIAL PLVQAGLGKA
401: YVEVLVANDH SKRVLHVQSI SSWAPSCIGP YSQATLHKGV LHMAGHLGLD PPTMNLRKEG AVAELNQALT NSEAIAEAFR CSISSSAILF VVFCSARTKE
501: SERNQLHEQF VSFLDLAKSS RRVANVIDPI FLYILVPDLP KSALVEVKPV LYVEEDEKTD DETRQGQLGE GDYSCWGYKP EKWHQDCLQT RVIDGKICLN
601: VLSISAEVMR KLDEPSGDEE EQLKRVSRFC VNPLNKTLSE NSFSWQDTTS LRIHFSTSLG VSVERLSDIF ETAFKVLNEM SGGGVAFNGL KEPIFNLVPV
701: LGAGNTSASL DNIITCELFS LRS
001: MKVVALVSGG KDSCYAMMKC IQYGHEIVAL ANLLPVDDSV DELDSYMYQT VGHQILVGYA ECMNVPLFRR RIRGSSRHQK LSYQMTPDDE VEDMFVLLSE
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
101: VKRQIPSITA VSSGAIASDY QRLRVESICS RLGLVSLAFL WKQDQTLLLQ DMIANGIKAI LVKVAAIGLD PSKHLGKDLA FMEPYLLKLK EKYGSNVCGE
201: GGEYETLTLD CPLFTNASIV LDEYQVVLHS PDSIAPVGVL HPSTFHLEKK GNPDSHSPEE ESSLVSEVLG DGPNTSDSTR QRDNGIVDLV EHTSNRLHIS
301: RAEKHNTFSI CCWLEDSSES SKGLKEDLET VLTELESQLL KHGYNWQHVL YIHLYISDMS EFAVANETYV KFITQEKCPF GVPSRSTIEL PLVQAGLGKA
401: YIEVLVANDE SKRVLHVQSI SCWAPSCIGP YSQATLHQSV LHMAGQLGLD PPTMNLQTEG AIAELNQALT NSEAIAESFN CSISSSAILF VVFCSARTKQ
501: SERNQLHEKF VTFLGLAKSS RRVQNVLDPM FLYILVPDLP KRALVEVKPI LYVEEDTDTE DETSRDQSGE GHYSIWGYKP EKWHQDCVQK RVVDGKVCVA
601: VLSISAELMR KLQGEEEELE IVSRFCVYLL NKTLSENSFS WQDTTSLRIH FSTSIGVSVE RLSAIFVSAF RELNEMSDGV KMDSLKEPIF NLVPVLGAGN
701: SSASLDNIIT CELFALRS
Arabidopsis Description
Endoribonuclease [Source:UniProtKB/TrEMBL;Acc:F4J3Q1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.