CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04260.1	CDX70151	AT5G05410.1	18552202
AT3G04260.1	CDX98843	AT5G05410.1	18552202
AT3G04260.1	CDY04950	AT5G05410.1	18552202
AT3G04260.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040142.1-P	Field mustard	plastid	99.67	99.89
CDY29994	Canola	plastid	94.6	95.87
AT3G04260.1	Thale cress	plastid	91.4	91.1
CDY29990	Canola	extracellular	3.86	83.33
VIT_04s0043g00700.t01	Wine grape	plastid	71.44	73.3
Solyc01g016920.1.1	Tomato	cytosol	4.74	72.88
GSMUA_Achr5P20530_001	Banana	cytosol	45.31	70.86
Solyc01g016930.1.1	Tomato	cytosol	6.06	67.9
Zm00001d032790_P002	Maize	cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid	59.1	67.59
GSMUA_Achr5P20540_001	Banana	plastid	21.83	65.35
Solyc01g014040.1.1	Tomato	cytosol	8.82	64.0
EER94118	Sorghum	plastid	62.4	63.88
Solyc01g016870.1.1	Tomato	cytosol	4.96	63.38
TraesCS1A01G144800.1	Wheat	plastid	61.19	62.85
TraesCS1B01G162100.2	Wheat	plastid	61.08	62.74
Os10t0462800-01	Rice	plastid	62.07	62.69
TraesCS1D01G143900.1	Wheat	plastid	60.97	62.63
HORVU1Hr1G038620.7	Barley	plastid	60.97	62.56
Solyc01g014000.1.1	Tomato	cytosol	5.29	58.54
Solyc01g013970.1.1	Tomato	nucleus	5.4	57.65
Solyc01g015200.1.1	Tomato	cytosol	7.5	56.67

Protein Annotations

Gene3D:1.10.720.30	Gene3D:1.25.40.10	MapMan:15.6.1.2.2.1	UniProt:A0A078G6R5	EnsemblPlants:CDY21131	ProteinID:CDY21131
ProteinID:CDY21131.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00015317001	InterPro:IPR003034
InterPro:IPR011990	InterPro:IPR036361	PFAM:PF02037	PFscan:PS50800	PANTHER:PTHR31407	PANTHER:PTHR31407:SF5
InterPro:SAP_dom	InterPro:SAP_dom_sf	SMART:SM00513	SUPFAM:SSF68906	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE2654
SEG:seg	:	:	:	:	:

Description

BnaA01g33620DBnaA01g33620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6R5]

Coordinates

chrLK032116:+:163153..167262

Molecular Weight (calculated)

102708.0 Da

IEP (calculated)

4.633

GRAVY (calculated)

-0.582

Length

907 amino acids

Sequence
(BLAST)

001: MSLFFLNPSL PSNSIHPIPR RAAGIPTTRC SISAPEKKPR RRRKQIQKRE NEDSSSFGSS EAVSALERSL RLTFMDELME RARNRDPSGV SEVIYDMIAA
101: GLTPGPRSFH GLVVAHALNG DEQGAMHSLR KELGAGQRPL PETMIALVRL SGSKGNAQRG LELLAAMEKL NYDIRQAWLI LVEELVRTNH LEEANKVFLK
201: GAKGGMRATD QLYDLMIEED CKAGDHSNAL EISYEMEAAG RFATTFHFNC LLSVQATCGI PEVAYATFEN MEYGEDFMKP NTETYNWVIQ AYTRADSYDR
301: VQDVAELLGM MVEDHKRVQP NVKTHALLVE CFTKYCVVKE AIRHFRALKN FEGGTKVLHN DGNFEDPLSL YLRALCREGR IVELIDALDA MRKDNQPIPP
401: RAMIMSRKYR TLVSSWIEPL QEEAELGYEI DYLARYVEEG GLTGDRKRWV PRRGKTPLDP DAAGFIYSNP IETSFKQRCL DDWKVHHRKL LRTLQSEGLP
501: VLGDASESDY MRVMERLRNI IKGPAQNLLK PKAASKMVVS ELKEELEAQG LPIDGTRNVL YQRVQKARRI NKSRGRPLWV PPIEEEEEEV DEEVDELICR
601: IKLHEGDTEF WKRRFLGEGL IETTAESIET DESVAAGGPE NKTEDVAKGA DDDEDDDEED QEGDEEDDEN EEEEEEEVVV AEPENRAEGE DLVKNKAADA
701: KRHLQMIGVQ LLKESDEASR TKKRGKRASR MTLEDDADED WFPEEPFEAF KEMRERKVFD VKDMYTIADV WGWTWEKDFK NKTPRRWSQE WEVELAIVIE
801: LGGVPTIGDC AVILRAAIRA PMPSAFLKIL QTTHSLGYAF GSPLYDEIIT LCLDLGELDA AIAIVADMET TGITVPDQTL DKVISVRQSN ESPKSEHEEP
901: PSSSESS

Best Arabidopsis Sequence Match ( AT3G04260.1 )
(BLAST)

001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS

Arabidopsis Description

PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.