Factsheet for VIT_04s0043g00700.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20530_001	Banana	cytosol	52.26	79.66
Solyc04g050540.2.1	Tomato	plastid	79.07	78.45
KRG92602	Soybean	nucleus	76.92	76.66
KRH34179	Soybean	nucleus	76.58	76.32
GSMUA_Achr5P20540_001	Banana	plastid	24.89	72.61
CDY29994	Canola	plastid	73.19	72.29
Zm00001d032790_P002	Maize	cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid	64.48	71.88
Bra040142.1-P	Field mustard	plastid	73.19	71.49
CDY21131	Canola	plastid	73.3	71.44
AT3G04260.1	Thale cress	plastid	73.42	71.32
CDY29990	Canola	extracellular	3.28	69.05
EER94118	Sorghum	plastid	67.53	67.38
TraesCS1B01G162100.2	Wheat	plastid	66.86	66.93
Os10t0462800-01	Rice	plastid	67.99	66.93
TraesCS1D01G143900.1	Wheat	plastid	66.63	66.7
HORVU1Hr1G038620.7	Barley	plastid	66.63	66.63
TraesCS1A01G144800.1	Wheat	plastid	66.4	66.48

Protein Annotations

Gene3D:1.10.720.30	Gene3D:1.25.40.10	EntrezGene:100241547	wikigene:100241547	MapMan:15.6.1.2.2.1	ProteinID:CBI28656
ProteinID:CBI28656.3	ncoils:Coil	UniProt:D7TDT3	EMBL:FN595763	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009295
GO:GO:0009507	GO:GO:0009508	GO:GO:0009536	GO:GO:0016020	InterPro:IPR003034	InterPro:IPR011990
InterPro:IPR036361	EntrezGene:LOC100241547	wikigene:LOC100241547	PFAM:PF02037	PFscan:PS50800	PANTHER:PTHR31407
PANTHER:PTHR31407:SF5	InterPro:SAP_dom	InterPro:SAP_dom_sf	SMART:SM00513	SUPFAM:SSF68906	TIGR:TC54530
TIGR:TC68539	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001BE3284	ArrayExpress:VIT_04s0043g00700	EnsemblPlantsGene:VIT_04s0043g00700	EnsemblPlants:VIT_04s0043g00700.t01
RefSeq:XP_002268094	RefSeq:XP_002268094.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:14621965..14683045

Molecular Weight (calculated)

100197.0 Da

IEP (calculated)

4.825

GRAVY (calculated)

-0.452

Length

884 amino acids

Sequence
(BLAST)

001: MSSLLTYAHL PFKSPYPTNP RRTLTLTSAI SSPEKRPRRK KKTKQPKEDS FVAVTAVSAG EKALRLTFME ELMERARSAD TAGVSEVFYD MVAAGLSPGP
101: RSFHGLIVST VLNGDDEGAM QSLRRELSAG LRPLHETFVA LIRLFGSKGY ATRGLEILAA MEKLNFDIRK AWLVLVEELV RHNHLEDANK VFLKGAKGGL
201: RATNELYDLL IEEDCKVGDH SNALTIAYEM EAAGRMATTY HFNCLLSVQA TCGIPEIAFA TFENMEYGED YMKPDTETYN WVIQAYTRAE SYDRVQDVAE
301: LLGMMVEDHK RLQPNVKTYA LLVECLTKYC VVREAIRHFR ALKNFEGGTK VLHDEGNFGD PLSLYLRALC REGRIVELLD ALEAMAKDNQ PIPPRAMILS
401: RKYRTLVSSW IEPLQEEAEL GYEIDYIARY IAEGGLTGDR KRWVPRRGKT PLDPDALGFI YSNPMETSFK QRCLEDWKMY HRKLLKTLRN EGLAALGEVS
501: ESDYIRVEER LRKIIKGPDQ NALKPKAASK MIVSELKEEL EAQGLPTDGT RNVLYQRVQK ARRINRSRGR PLWVPPVEEE EEEVDEELDE LISRIKLQEG
601: NTEFWKRRFL GEDLTVGRGK PMDKENSELP DVLDDADIGE DTAKEVEDDE ADEEEEEVEP TESQVADRVK DKEVEAAKPL QMIGVQLLKD SDQTTPATRK
701: SRRKLSRASM EDSDDDDWFP LDIHEAFKEM RERKIFDVSD MYTIADVWGW TWEKELKNKP PRSWTQEWEV ELAIKVMLKV IELGGTPTIG DCAMILRAAI
801: RAPLPSAFLK VLQTTHKLGY VFGSPLYNEV IILCLDLGEL DAAIAIVADM ETSGIAVPDE TLDRVISARQ MIDTAATDDT SSQQ

Best Arabidopsis Sequence Match ( AT3G04260.1 )
(BLAST)

001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS

Arabidopsis Description

PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.