Factsheet for Solyc04g050540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0043g00700.t01	Wine grape	plastid	78.45	79.07
GSMUA_Achr5P20530_001	Banana	cytosol	50.06	76.9
KRG92602	Soybean	nucleus	73.96	74.3
Solyc01g013970.1.1	Tomato	nucleus	7.07	74.12
KRH34179	Soybean	nucleus	73.51	73.84
Solyc01g014040.1.1	Tomato	cytosol	10.33	73.6
Solyc01g016920.1.1	Tomato	cytosol	4.83	72.88
Solyc01g016930.1.1	Tomato	cytosol	6.62	72.84
Solyc01g014000.1.1	Tomato	cytosol	6.62	71.95
Zm00001d032790_P002	Maize	cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid	63.97	71.88
GSMUA_Achr5P20540_001	Banana	plastid	23.34	68.65
Solyc01g015200.1.1	Tomato	cytosol	9.2	68.33
EER94118	Sorghum	plastid	66.89	67.27
Os10t0462800-01	Rice	plastid	67.56	67.04
TraesCS1B01G162100.2	Wheat	plastid	65.66	66.25
Solyc01g016870.1.1	Tomato	cytosol	5.27	66.2
TraesCS1A01G144800.1	Wheat	plastid	65.54	66.14
HORVU1Hr1G038620.7	Barley	plastid	65.54	66.06
TraesCS1D01G143900.1	Wheat	plastid	65.32	65.91

Protein Annotations

Gene3D:1.10.720.30	Gene3D:1.25.40.10	MapMan:15.6.1.2.2.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR003034	InterPro:IPR011990	InterPro:IPR036361	UniProt:K4BS23	PFAM:PF02037
PFscan:PS50800	PANTHER:PTHR31407	PANTHER:PTHR31407:SF5	InterPro:SAP_dom	InterPro:SAP_dom_sf	SMART:SM00513
SUPFAM:SSF68906	EnsemblPlantsGene:Solyc04g050540.2	EnsemblPlants:Solyc04g050540.2.1	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002766DAC	SEG:seg

Description

No Description!

Coordinates

chr4:-:47536619..47556468

Molecular Weight (calculated)

100998.0 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.474

Length

891 amino acids

Sequence
(BLAST)

001: MAGLSIHLPF NSKFNLPIPY TSISRSIGSR VKASVSSQPR KTRRKKQQQH QLKTVDDDGS MASGTEKVLR LVFMEELMER ARNADSAGVS QVIYDMIAAG
101: LSPGPRSFHG LVVAHVLHRD NDGAMHALRR ELSEGLRPLH ETFLALVRLF GANGLATRGL EILAAMEKLN YDIRQAWLVL VEELVRSNHL EDANKVFLKG
201: AEGGLRATDE IYDLLIEEDC KVGDHSNALT IAYEMEAAGR MATTSHFNCL LSVQASCGIP EIAFATFENM EYGDDHMKPD TETYNWVIQA YTRAESYDRV
301: QDVAELLGMM VEDHKRLQPN VRTYALLVEC FTKYCVVREA IRHFRGLKNF EGGTQVLYND GKYGDPLSLY LRALCREGRI VELLEALEAM AKDNQPIPPR
401: AMILSRKYRT LVSSWIEPLQ EEAELGYEID YIARYVAEGG LTGDRKRWVP RRGKTPLDPD AQGFIYSNPR ETSFKQRCFE EWRLHHRKLL KTLLNEGPSI
501: LGKVSEYDYI RIEERLRKVI KGPEQSALKP KAASKMVVSE LKEELEAQGL PTDGTRNVLY QRVQKARRIN RSRGRPLWVP PVEEEEEEVD EELDELISRI
601: KLHEGNTEFW KRRFLGEGLS ENYGQQSEII DLEPTDVVDD NDAVDDITKD AEDDEAEDDE AQDEEEEVEQ TESQPEISDR KDKEVEAAKP LQMIGVQLLK
701: DSDLTASSSK KSRRRLSRVA AVDDDDDDWF PLDIHEAFVE LRKRKVFDVS DMYTITDAWG WTWEKEIKNK APRRWSQEWE VELAIKVMTK VIELGGTPTI
801: GDCAMILRSA VRAPMPSAFL KILQTTHSLG YVFGSPLYDE IIILCLDLGE LDAAIAIVAD LETSGIKVPD ETLDRVISAR QGSDTPVNGS Q

Best Arabidopsis Sequence Match ( AT3G04260.1 )
(BLAST)

001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS

Arabidopsis Description

PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.