CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG21735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04260.1	KXG21735	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032790_P002	Maize	cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid	86.23	96.34
Os10t0462800-01	Rice	plastid	90.52	89.31
TraesCS1A01G144800.1	Wheat	plastid	87.02	87.32
HORVU1Hr1G038620.7	Barley	plastid	86.91	87.1
TraesCS1B01G162100.2	Wheat	plastid	86.79	87.09
TraesCS1D01G143900.1	Wheat	plastid	86.68	86.98
GSMUA_Achr5P20530_001	Banana	cytosol	47.97	73.28
VIT_04s0043g00700.t01	Wine grape	plastid	67.38	67.53
Solyc04g050540.2.1	Tomato	plastid	67.27	66.89
KRG92602	Soybean	nucleus	65.91	65.84
KRH34179	Soybean	nucleus	65.91	65.84
GSMUA_Achr5P20540_001	Banana	plastid	22.46	65.68
CDY29990	Canola	extracellular	3.05	64.29
AT3G04260.1	Thale cress	plastid	64.9	63.19
CDY29994	Canola	plastid	63.77	63.13
Bra040142.1-P	Field mustard	plastid	63.77	62.43
CDY21131	Canola	plastid	63.88	62.4

Protein Annotations

Gene3D:1.10.720.30	Gene3D:1.25.40.10	MapMan:15.6.1.2.2.1	UniProt:C5WZE7	EnsemblPlants:EER94118	ProteinID:EER94118
ProteinID:EER94118.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508	GO:GO:0009536
GO:GO:0016020	InterPro:IPR003034	InterPro:IPR011990	InterPro:IPR036361	PFAM:PF02037	PFscan:PS50800
PANTHER:PTHR31407	PANTHER:PTHR31407:SF5	InterPro:SAP_dom	InterPro:SAP_dom_sf	SMART:SM00513	EnsemblPlantsGene:SORBI_3001G228300
SUPFAM:SSF68906	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00081AD6DB	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:21899715..21916545

Molecular Weight (calculated)

99455.1 Da

IEP (calculated)

4.664

GRAVY (calculated)

-0.451

Length

886 amino acids

Sequence
(BLAST)

001: MATPSTSAPA PSPSSAFPLT TTARFPRSCA CAVRASALAE RRRTRRRRAP EGGGAGGDRS AAAGAVEKGL RLAFLEQLAE RARAADAAGV ADTIYDMVAA
101: GLSPGPRSFH GLVAAHVLAG NAEGAMQSLR RELSSGVRPL HETFVALVRV FAKKGLSTRG MEILAAMERY KYDIRKAWLI LVEELVKNHY LEDANTVFLK
201: GAKGGLRGTD EIYDLLIEED CKAGDHSNAL TVAYQMEASG RMATTFHFNC LLSVQATCGI PEVAFATFEN MEYGGEDYMK PDTESYNWVI QAFTRATSYD
301: RAADVAELLG MMVEDHKRIQ PNARTYALLV ECFTKYCMVN ESIRHFRALQ RIPGGTKVLY NEGNCGDPLS LYLRSLCLDG RPVELLEALE AMANDNQSIT
401: PRAMILNRKY RTLVSSWIEP LQEEADVGFE IDYVARYIEE GGLTGERKRW VPRRGKTPLD PDEFGFAYSN PIETSFKQRC FEELKLYHRK LLITLRNEGP
501: GILGDVSEED VRRVIERLKK LVVGPKKNVV KPKAASKMVV SELKTELEAQ GLPTDGTRQV LYQRVQKARR INRSRGIPLW VPPIEDEEEV DQGLDELISR
601: IKPEDGNTEF WKRRFLGETR NYLCEEDSKE DDQDLDDELE DDDDDDEDDD ESVKEAEDEI DDEEVVEQTE NQVGDETKDK PAKGPNHHLQ MIGVQLLKDL
701: EKTPVSSKKL KRMPEIDDDE DWFPEDPIEA FKVMREERMF DVSDMYTTAD AWGWTWEREI KNKMPRKWSQ EWEVELAIKI MHKVIELGGT PTIGDCAIIL
801: RAAMRAPLPS AFIPILQTTH SLGYKFGSPL YDEVVLLCLD LEEIDAAIAV VAEMETCGFK VPDETLDKVL ASKQSGNSVL PPPIEE

Best Arabidopsis Sequence Match ( AT3G04260.1 )
(BLAST)

001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS

Arabidopsis Description

PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.