Factsheet for Bra040142.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005852.1-P
Bra009112.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04260.1	Bra005852.1-P	AT5G05410.1	18552202
AT3G04260.1	Bra009112.1-P	AT5G05410.1	18552202
AT3G04260.1	Bra028759.1-P	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21131	Canola	plastid	99.89	99.67
AT3G04260.1	Thale cress	plastid	91.49	90.99
VIT_04s0043g00700.t01	Wine grape	plastid	71.49	73.19
Solyc01g016920.1.1	Tomato	cytosol	4.75	72.88
GSMUA_Achr5P20530_001	Banana	cytosol	45.3	70.69
KRH34172	Soybean	cytosol	7.73	68.63
Solyc01g016930.1.1	Tomato	cytosol	6.08	67.9
Zm00001d032790_P002	Maize	cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid	59.12	67.47
GSMUA_Achr5P20540_001	Banana	plastid	21.88	65.35
Solyc01g014040.1.1	Tomato	cytosol	8.84	64.0
EER94118	Sorghum	plastid	62.43	63.77
Solyc01g016870.1.1	Tomato	cytosol	4.97	63.38
TraesCS1A01G144800.1	Wheat	plastid	61.22	62.74
TraesCS1B01G162100.2	Wheat	plastid	61.1	62.63
Os10t0462800-01	Rice	plastid	62.1	62.58
TraesCS1D01G143900.1	Wheat	plastid	60.99	62.51
HORVU1Hr1G038620.7	Barley	plastid	60.99	62.44
Solyc01g014000.1.1	Tomato	cytosol	5.3	58.54
Solyc01g013970.1.1	Tomato	nucleus	5.41	57.65
Solyc01g015200.1.1	Tomato	cytosol	7.51	56.67

Protein Annotations

Gene3D:1.10.720.30	Gene3D:1.25.40.10	MapMan:15.6.1.2.2.1	EnsemblPlantsGene:Bra040142	EnsemblPlants:Bra040142.1	EnsemblPlants:Bra040142.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508	GO:GO:0009536	GO:GO:0016020
InterPro:IPR003034	InterPro:IPR011990	InterPro:IPR036361	UniProt:M4FGB4	PFAM:PF02037	PFscan:PS50800
PANTHER:PTHR31407	PANTHER:PTHR31407:SF5	InterPro:SAP_dom	InterPro:SAP_dom_sf	SMART:SM00513	SUPFAM:SSF68906
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000254507C	SEG:seg	:	:	:

Description

AT3G04260 (E=0.0) PTAC3 | PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding / nucleic acid binding

Coordinates

chrA01:+:28461676..28465798

Molecular Weight (calculated)

102462.0 Da

IEP (calculated)

4.658

GRAVY (calculated)

-0.570

Length

905 amino acids

Sequence
(BLAST)

001: MSLFFLNPSL PSNSIHPIPR RAAGIPTTRC SISAPEKKPR RRRKQIQKRE NEDSSSFGSS EAVSALERSL RLTFMDELME RARNRDPSGV SEVIYDMIAA
101: GLTPGPRSFH GLVVAHALNG DEQGAMHSLR KELGAGQRPL PETMIALVRL SGSKGNAQRG LELLAAMEKL NYDIRQAWLI LVEELVRTNH LEEANKVFLK
201: GAKGGMRATD QLYDLMIEED CKAGDHSNAL EISYEMEAAG RFATTFHFNC LLSVQATCGI PEVAYATFEN MEYGEDFMKP NTETYNWVIQ AYTRADSYDR
301: VQDVAELLGM MVEDHKRVQP NVKTHALLVE CFTKYCVVKE AIRHFRALKN FEGGTKVLHN DGNFEDPLSL YLRALCREGR IVELIDALDA MRKDNQPIPP
401: RAMIMSRKYR TLVSSWIEPL QEEAELGYEI DYLARYVEEG GLTGDRKRWV PRRGKTPLDP DAAGFIYSNP IETSFKQRCL DDWKVHHRKL LRTLQSEGLP
501: VLGDASESDY MRVMERLRNI IKGPAQNLLK PKAASKMVVS ELKEELEAQG LPIDGTRNVL YQRVQKARRI NKSRGRPLWV PPIEEEEEEV DEEVDELICR
601: IKLHEGDTEF WKRRFLGEGL IETTAESIET DESVAAGGPE NKTEDVAKGA DDDEDDDEED QEGDEEDDEN EEEEEVVVAE PENRAEGEDL VKNKAADAKR
701: HLQMIGVQLL KESDEASRTK KRGKRASRMT LEDDADEDWF PEEPFEAFKE MRERKVFDVK DMYTIADVWG WTWEKDFKNK TPRRWSQEWE VELAIVIELG
801: GVPTIGDCAV ILRAAIRAPM PSAFLKILQT IHSLGYAFGS PLYDEIITLC LDLGELDAAI AIVADMETTG ITVPDQTLDK VISVRQSNES PKSEHEEPPS
901: SSESS

Best Arabidopsis Sequence Match ( AT3G04260.1 )
(BLAST)

001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS

Arabidopsis Description

PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.