Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, mitochondrion, plastid, cytosol, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 2
- mitochondrion 1
- endoplasmic reticulum 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010048_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04260.1 | Zm00001d010048_P004 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER94118 | Sorghum | plastid | 96.34 | 86.23 |
| Os10t0462800-01 | Rice | plastid | 90.16 | 79.62 |
| TraesCS1A01G144800.1 | Wheat | plastid | 88.4 | 79.39 |
| TraesCS1D01G143900.1 | Wheat | plastid | 88.15 | 79.16 |
| HORVU1Hr1G038620.7 | Barley | plastid | 88.15 | 79.07 |
| TraesCS1B01G162100.2 | Wheat | plastid | 88.02 | 79.05 |
| GSMUA_Achr5P20530_001 | Banana | cytosol | 54.1 | 73.97 |
| VIT_04s0043g00700.t01 | Wine grape | plastid | 71.88 | 64.48 |
| CDY29990 | Canola | extracellular | 3.4 | 64.29 |
| Solyc04g050540.2.1 | Tomato | plastid | 71.88 | 63.97 |
| KRH34179 | Soybean | nucleus | 71.37 | 63.81 |
| KRG92602 | Soybean | nucleus | 71.25 | 63.7 |
| AT3G04260.1 | Thale cress | plastid | 68.85 | 60.0 |
| CDY29994 | Canola | plastid | 67.47 | 59.78 |
| Bra040142.1-P | Field mustard | plastid | 67.47 | 59.12 |
| CDY21131 | Canola | plastid | 67.59 | 59.1 |
| GSMUA_Achr5P20540_001 | Banana | plastid | 21.19 | 55.45 |
Protein Annotations
| Gene3D:1.10.720.30 | Gene3D:1.25.40.10 | MapMan:15.6.1.2.2.1 | UniProt:A0A1D6KTZ6 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009295 | GO:GO:0009507 | GO:GO:0009508 | GO:GO:0009536 | GO:GO:0016020 | InterPro:IPR003034 |
| InterPro:IPR011990 | InterPro:IPR036361 | ProteinID:ONM06059.1 | PFAM:PF02037 | PFscan:PS50800 | PANTHER:PTHR31407 |
| PANTHER:PTHR31407:SF5 | InterPro:SAP_dom | InterPro:SAP_dom_sf | SMART:SM00513 | SUPFAM:SSF68906 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000842BC2A | EnsemblPlantsGene:Zm00001d032790 | EnsemblPlants:Zm00001d032790_P002 | EnsemblPlants:Zm00001d032790_T002 | SEG:seg | : |
Description
plastid transcriptionally active 3
Coordinates
chr1:-:238206823..238227599
Molecular Weight (calculated)
90017.8 Da
IEP (calculated)
4.470
GRAVY (calculated)
-0.489
Length
793 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAAGLSPGP RSFHGLVAAH VLAGNAEGAM QSLRRELSSG VRPLHETFVA LVRVFAKKGL STRGMEILAA MERYKYDIRK AWLILVEELV KNHYLEDANT
101: VFLKGAKGGL RGTDDIYDLL IEEDCKAGDH SNALTVAYQM EAYGRMATTF HFNCLLSVQA TCGIPEVAFA TFENMEYGGE DYMKPDTESY NWVIQAFTRA
201: TSYDRAADVA ELLGMMVEDH KRIQPNARTY ALLVECFTKY CMVNESIRHF RALQRIPGGT EVLYNEGNCG DPLSLYLRSL CLDGRPVELL EALEAMANDN
301: QSIAPRAMIL NRKYRTLVSS WIEPLQEEAD VGFEIDYVAR YIEEGGLTGE RKRWVPRRGK TPLDPDEFGF AYSNPIETSF KQRCFEELKL YHRKLLITLR
401: NEGPGILGDV SEEDVRRVIE RLKKLVVGPK KNVVKPKAAS KMVVSELKTE LEAQGLPTDG TRQVLYQRVQ KARRINRSRG VPLWVPPVED EEEVDEDLDE
501: LISRIKPEDG NTEFWKRRFL GETRNYLCEE DSKEDGQDLD DELEDDDDND DDEDDDESVK EAEEDEIDDE EVVEQTENQV GDDTKDKPAK EPNHHLQMIG
601: VQLLKDIERT PVSSKKLKRM PEIDDDEDWF PEDPIEAFKV MREERMFDVS DMYTTADAWG WTWEREIKNK MPRKWSQEWE VELAIKIMHK VIELGGTPTI
701: GDCAIILRAA MRAPLPSAFI PILQTTHSLG YKFGSPLYDE VVLLCLDLEE IDAAIAVVAE METCGVKVPD ETLDKVLASK RSGNSALPPP TEE
101: VFLKGAKGGL RGTDDIYDLL IEEDCKAGDH SNALTVAYQM EAYGRMATTF HFNCLLSVQA TCGIPEVAFA TFENMEYGGE DYMKPDTESY NWVIQAFTRA
201: TSYDRAADVA ELLGMMVEDH KRIQPNARTY ALLVECFTKY CMVNESIRHF RALQRIPGGT EVLYNEGNCG DPLSLYLRSL CLDGRPVELL EALEAMANDN
301: QSIAPRAMIL NRKYRTLVSS WIEPLQEEAD VGFEIDYVAR YIEEGGLTGE RKRWVPRRGK TPLDPDEFGF AYSNPIETSF KQRCFEELKL YHRKLLITLR
401: NEGPGILGDV SEEDVRRVIE RLKKLVVGPK KNVVKPKAAS KMVVSELKTE LEAQGLPTDG TRQVLYQRVQ KARRINRSRG VPLWVPPVED EEEVDEDLDE
501: LISRIKPEDG NTEFWKRRFL GETRNYLCEE DSKEDGQDLD DELEDDDDND DDEDDDESVK EAEEDEIDDE EVVEQTENQV GDDTKDKPAK EPNHHLQMIG
601: VQLLKDIERT PVSSKKLKRM PEIDDDEDWF PEDPIEAFKV MREERMFDVS DMYTTADAWG WTWEREIKNK MPRKWSQEWE VELAIKIMHK VIELGGTPTI
701: GDCAIILRAA MRAPLPSAFI PILQTTHSLG YKFGSPLYDE VVLLCLDLEE IDAAIAVVAE METCGVKVPD ETLDKVLASK RSGNSALPPP TEE
001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS
Arabidopsis Description
PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.