CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P20530_001	Banana	cytosol	71.43	5.17
CDY21131	Canola	plastid	83.33	3.86
CDY29994	Canola	plastid	80.95	3.8
Zm00001d032790_P002	Maize	cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid	64.29	3.4
VIT_04s0043g00700.t01	Wine grape	plastid	69.05	3.28
Os10t0462800-01	Rice	plastid	66.67	3.12
TraesCS1A01G144800.1	Wheat	plastid	64.29	3.06
TraesCS1B01G162100.2	Wheat	plastid	64.29	3.06
TraesCS1D01G143900.1	Wheat	plastid	64.29	3.06
HORVU1Hr1G038620.7	Barley	plastid	64.29	3.05
EER94118	Sorghum	plastid	64.29	3.05
Solyc01g016870.1.1	Tomato	cytosol	2.38	1.41
GSMUA_Achr5P20540_001	Banana	plastid	0.0	0.0
KRH34172	Soybean	cytosol	0.0	0.0
Solyc01g013970.1.1	Tomato	nucleus	0.0	0.0
Solyc01g014000.1.1	Tomato	cytosol	0.0	0.0
Solyc01g014040.1.1	Tomato	cytosol	0.0	0.0
Solyc01g015200.1.1	Tomato	cytosol	0.0	0.0
Solyc01g016920.1.1	Tomato	cytosol	0.0	0.0
Solyc01g016930.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY29990	EnsemblPlantsGene:GSBRNA2T00044512001	PANTHER:PTHR31407	PANTHER:PTHR31407:SF5	ProteinID:CDY29990	ProteinID:CDY29990.1
UniParc:UPI0004EE59AA	UniProt:A0A078GU13	MapMan:35.2	:	:	:

Description

BnaC01g40180DBnaC01g40180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GU13]

Coordinates

chrLK032247:-:321966..322718

Molecular Weight (calculated)

4527.6 Da

IEP (calculated)

3.917

GRAVY (calculated)

0.929

Length

42 amino acids

Sequence
(BLAST)

1: MPSVLLKILQ TTHSLAYSFG SLLCDEIITF CLDLGELDAA IA

Best Arabidopsis Sequence Match ( AT3G04260.1 )
(BLAST)

001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS

Arabidopsis Description

PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.