Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G221900.1 | |
| TraesCS1B01G235100.2 | |
| TraesCS1D01G223600.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G04260.1 | TraesCS1A01G221900.1 | AT5G05410.1 | 18552202 |
| AT3G04260.1 | TraesCS1B01G235100.2 | AT5G05410.1 | 18552202 |
| AT3G04260.1 | TraesCS1D01G223600.2 | AT5G05410.1 | 18552202 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G162100.2 | Wheat | plastid | 99.21 | 99.21 |
| TraesCS1A01G144800.1 | Wheat | plastid | 98.07 | 98.07 |
| HORVU1Hr1G038620.7 | Barley | plastid | 97.73 | 97.62 |
| Zm00001d032790_P002 | Maize | cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid | 79.16 | 88.15 |
| EER94118 | Sorghum | plastid | 86.98 | 86.68 |
| Os10t0462800-01 | Rice | plastid | 87.32 | 85.86 |
| GSMUA_Achr5P20530_001 | Banana | cytosol | 47.23 | 71.9 |
| VIT_04s0043g00700.t01 | Wine grape | plastid | 66.7 | 66.63 |
| Solyc04g050540.2.1 | Tomato | plastid | 65.91 | 65.32 |
| KRG92602 | Soybean | nucleus | 65.57 | 65.28 |
| KRH34179 | Soybean | nucleus | 65.23 | 64.94 |
| GSMUA_Achr5P20540_001 | Banana | plastid | 22.08 | 64.36 |
| CDY29990 | Canola | extracellular | 3.06 | 64.29 |
| CDY29994 | Canola | plastid | 62.85 | 62.01 |
| AT3G04260.1 | Thale cress | plastid | 63.53 | 61.65 |
| Bra040142.1-P | Field mustard | plastid | 62.51 | 60.99 |
| CDY21131 | Canola | plastid | 62.63 | 60.97 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G143900.1 | EnsemblPlantsGene:TraesCS1D01G143900 | Gene3D:1.10.720.30 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR003034 | InterPro:IPR011990 | InterPro:IPR036361 | InterPro:SAP_dom | InterPro:SAP_dom_sf |
| InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR31407 | PANTHER:PTHR31407:SF5 | PFAM:PF02037 | PFscan:PS50800 | SEG:seg |
| SMART:SM00513 | SUPFAM:SSF68906 | MapMan:15.6.1.2.2.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:+:199417785..199428182
Molecular Weight (calculated)
98948.5 Da
IEP (calculated)
4.705
GRAVY (calculated)
-0.435
Length
883 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPSTSAST AASSAFPLTT AARFPRASTS GTRIPALAER RRTRRRRLPE GSGGDRSAAA GAVEKGLRLA FLEQLAERAR AADALGVADT IYDMVAAGLS
101: PGPRSFHGLV AAHALAGDAE GAMQTLRREL SSGVRPLHET FVALVRVFAK KGLSTRAMEI LAAMERYKYD IRKAWLVLVE ELVRNHYLED ANTVFLKGAK
201: GGLQGTDDLY DLLIEEDCKA GDHSNALTVA YQMEAAGRMA TTFHFNCLLS VQATCGIPEI AFSTYENMEY GGEDYMKPDT ESYNWVIQAF TRATSHDRAP
301: DVAELLGMMV EDYKRVQPNA RTYALLVECF TKYCMVNEAI RHFRALRRIP GGTKVLYNAG NCGDPLSLYL RSLCLDGRAD ELLEALEAMA DDNQTIAPRA
401: MILNRKYRTL VSSWIEPLQE EADVGFDIDY VARYIEEGGL TGERKRWVPR RGKTPLDPDE FGFAYSNPIE TSFKLRCFEE LKLYHRRLLI TLRNEGPGIL
501: GDVSEDDVRR VVERLKKLVV GPKKNVVKPK AASKMVVAEL KIELEAQGLP TDGTRQVLYQ RVQKARRINR SRGIPLWVPP VEDDEVVDEE LDEMISRIKL
601: EDGNTEFWKR RFLGETRNHL CEEDSKEDPD FDDELDDDDD DDDDDDSAKE ADEDEIDDEV IDRTENQAGD DETKDKPAKG PNQHLQMIGV QLLKDLEKTS
701: GSTKKLKKIP EIDDDEDWFP EDPIEAFKVM RETRMFNVAD MYTTADAWGW TWERELKKKM PRRWSQEWEV ELAIKIMNKV IELGGSPTIG DCAIILRAAM
801: RAPVPSAFIT ILQTTHSLGH KFGSPLYDEV ILLCLDLEEM DAAIAVVAEM ETNGIKVLDE TLDRVLAAKQ IGNGNSALQP PAE
101: PGPRSFHGLV AAHALAGDAE GAMQTLRREL SSGVRPLHET FVALVRVFAK KGLSTRAMEI LAAMERYKYD IRKAWLVLVE ELVRNHYLED ANTVFLKGAK
201: GGLQGTDDLY DLLIEEDCKA GDHSNALTVA YQMEAAGRMA TTFHFNCLLS VQATCGIPEI AFSTYENMEY GGEDYMKPDT ESYNWVIQAF TRATSHDRAP
301: DVAELLGMMV EDYKRVQPNA RTYALLVECF TKYCMVNEAI RHFRALRRIP GGTKVLYNAG NCGDPLSLYL RSLCLDGRAD ELLEALEAMA DDNQTIAPRA
401: MILNRKYRTL VSSWIEPLQE EADVGFDIDY VARYIEEGGL TGERKRWVPR RGKTPLDPDE FGFAYSNPIE TSFKLRCFEE LKLYHRRLLI TLRNEGPGIL
501: GDVSEDDVRR VVERLKKLVV GPKKNVVKPK AASKMVVAEL KIELEAQGLP TDGTRQVLYQ RVQKARRINR SRGIPLWVPP VEDDEVVDEE LDEMISRIKL
601: EDGNTEFWKR RFLGETRNHL CEEDSKEDPD FDDELDDDDD DDDDDDSAKE ADEDEIDDEV IDRTENQAGD DETKDKPAKG PNQHLQMIGV QLLKDLEKTS
701: GSTKKLKKIP EIDDDEDWFP EDPIEAFKVM RETRMFNVAD MYTTADAWGW TWERELKKKM PRRWSQEWEV ELAIKIMNKV IELGGSPTIG DCAIILRAAM
801: RAPVPSAFIT ILQTTHSLGH KFGSPLYDEV ILLCLDLEEM DAAIAVVAEM ETNGIKVLDE TLDRVLAAKQ IGNGNSALQP PAE
001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS
Arabidopsis Description
PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.