CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04260.1	CDX70151	AT5G05410.1	18552202
AT3G04260.1	CDX98843	AT5G05410.1	18552202
AT3G04260.1	CDY04950	AT5G05410.1	18552202
AT3G04260.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21131	Canola	plastid	95.87	94.6
AT3G04260.1	Thale cress	plastid	90.28	88.79
CDY29990	Canola	extracellular	3.8	80.95
VIT_04s0043g00700.t01	Wine grape	plastid	72.29	73.19
Solyc01g016920.1.1	Tomato	cytosol	4.8	72.88
GSMUA_Achr5P20530_001	Banana	cytosol	46.03	71.03
Solyc01g016930.1.1	Tomato	cytosol	6.15	67.9
Zm00001d032790_P002	Maize	cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid	59.78	67.47
GSMUA_Achr5P20540_001	Banana	plastid	22.12	65.35
EER94118	Sorghum	plastid	63.13	63.77
Solyc01g016870.1.1	Tomato	cytosol	5.03	63.38
TraesCS1A01G144800.1	Wheat	plastid	62.23	63.08
TraesCS1B01G162100.2	Wheat	plastid	62.12	62.97
TraesCS1D01G143900.1	Wheat	plastid	62.01	62.85
Os10t0462800-01	Rice	plastid	62.91	62.69
HORVU1Hr1G038620.7	Barley	plastid	61.79	62.56
Solyc01g014040.1.1	Tomato	cytosol	8.72	62.4
Solyc01g014000.1.1	Tomato	cytosol	5.36	58.54
Solyc01g015200.1.1	Tomato	cytosol	7.6	56.67
Solyc01g013970.1.1	Tomato	nucleus	5.25	55.29

Protein Annotations

Gene3D:1.10.720.30	Gene3D:1.25.40.10	MapMan:15.6.1.2.2.1	UniProt:A0A078GY11	EnsemblPlants:CDY29994	ProteinID:CDY29994
ProteinID:CDY29994.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00044517001	InterPro:IPR003034
InterPro:IPR011990	InterPro:IPR036361	PFAM:PF02037	PFscan:PS50800	PANTHER:PTHR31407	PANTHER:PTHR31407:SF5
InterPro:SAP_dom	InterPro:SAP_dom_sf	SMART:SM00513	SUPFAM:SSF68906	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE737A
SEG:seg	:	:	:	:	:

Description

BnaC01g40140DBnaC01g40140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY11]

Coordinates

chrLK032247:-:342293..346211

Molecular Weight (calculated)

101389.0 Da

IEP (calculated)

4.697

GRAVY (calculated)

-0.545

Length

895 amino acids

Sequence
(BLAST)

001: MSLFFLNPAL PSNSIHPIPR RAAGFVASTR CSISALEKKP RRRRKQIQKR ENEDSSSFGS SEAVSALERS LRLTFMDELM ERARNRDTSG VSEVIYDMIA
101: AGLTPGPRSF HGLVVAHALN GDEQGAMHSL RKELGAGQRP LPETMIALVR LSGSKGNAQR GLELLAAMEK LNYDIRQAWL ILVEELVRTN HLEEANKVFL
201: KGAKGGMRAT DKLYDLMIEE DCKAGDHSNA LEISYEMEAA GRFATTFHFN CLLSVQATCG IPEVAYATFE NMEYGEDFMK PNTETYNWVI QAYTRADSYD
301: RVQDVAELLG MMVEDHKRVQ PNVKTHALLV ECFTKYCVVK EAIRHFRALK KFEGGTKVLH NAGNFEDPLS LYLRALCREG RIVELIDALD AMRKDNQPIP
401: PRAMIMSRKY RTLVSSWIEP LQEEAELGYE IDYLARYVEE GGLTGDRKRW VPRRGKTPLD PDAAGFIYSN PIETSFKQRC LDDWKVHHRK LFRTLQSEGL
501: PVLGDATESD YMRVMERLRN IIKGPAQNLL KPKAASKMVV SELKEELEAQ GLPIDGTRNV LYQRVQKARR INKSRGRPLW VPPIEEEEEE VDEEVDELIC
601: RIKLHEGDTE FWKRRFLGEG LIETTADSIE TDESVAAGAD DDEDDDEEEE QEGDEDDDEN EEEEEVVVAE PENRAEGQDL VKNKAADAKR HLQMIGVQLL
701: KESDEANRTK KRGKRASRMT LEDDADEDWF PEEPFEAFKE MRERKVFDVS DMYTIADVWG WTWEKDFKNK TPRRWSQEWE VELAIVIELG GVPTIGDCAV
801: ILRAAIRAPV PSAFLKILQT THSLGYAFGS PLYDEIITLC LDLGELDAAI AIVADMETTG ITVPDQTLDK VISARQSNES PKPEHEEPPS SSESS

Best Arabidopsis Sequence Match ( AT3G04260.1 )
(BLAST)

001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS

Arabidopsis Description

PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.