Factsheet for Os10t0462800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94118	Sorghum	plastid	89.31	90.52
Zm00001d032790_P002	Maize	cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid	79.62	90.16
TraesCS1B01G162100.2	Wheat	plastid	85.97	87.43
TraesCS1D01G143900.1	Wheat	plastid	85.86	87.32
TraesCS1A01G144800.1	Wheat	plastid	85.63	87.09
HORVU1Hr1G038620.7	Barley	plastid	85.41	86.76
GSMUA_Achr5P20530_001	Banana	cytosol	47.88	74.14
VIT_04s0043g00700.t01	Wine grape	plastid	66.93	67.99
Solyc04g050540.2.1	Tomato	plastid	67.04	67.56
CDY29990	Canola	extracellular	3.12	66.67
KRG92602	Soybean	nucleus	65.26	66.07
KRH34179	Soybean	nucleus	65.26	66.07
GSMUA_Achr5P20540_001	Banana	plastid	22.16	65.68
CDY29994	Canola	plastid	62.69	62.91
AT3G04260.1	Thale cress	plastid	63.47	62.64
Bra040142.1-P	Field mustard	plastid	62.58	62.1
CDY21131	Canola	plastid	62.69	62.07

Protein Annotations

Gene3D:1.10.720.30	Gene3D:1.25.40.10	MapMan:15.6.1.2.2.1	EntrezGene:4348823	ProteinID:AAN05531.1	ProteinID:AAP54158.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009295	GO:GO:0009507	GO:GO:0009508	GO:GO:0009536	GO:GO:0016020
InterPro:IPR003034	InterPro:IPR011990	InterPro:IPR036361	EnsemblPlantsGene:Os10g0462800	EnsemblPlants:Os10t0462800-01	PFAM:PF02037
PFscan:PS50800	PANTHER:PTHR31407	PANTHER:PTHR31407:SF5	UniProt:Q8H902	InterPro:SAP_dom	InterPro:SAP_dom_sf
SMART:SM00513	SUPFAM:SSF68906	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00000AD122	RefSeq:XP_015614917.1	SEG:seg

Description

WHITE STRIPE LEAF 3Component of the plastid-encoded plastid RNA polymerase (PEP), peripheral subunit of PEP complex, OsPAP1/OspTAC3, Early chloroplast development (Os10t0462800-01)

Coordinates

chr10:+:17040029..17047589

Molecular Weight (calculated)

100149.0 Da

IEP (calculated)

4.572

GRAVY (calculated)

-0.472

Length

898 amino acids

Sequence
(BLAST)

001: MATPTPTPST SAPAAPPSSA FPLTAAARFP RARAASASTS STRASALAER RRTRRRRLPE GSGGGGDRSA AAGAVEKGLR LAFLEQLAER ARAADAAGVA
101: DAIYDMVAAG LSPGPRSFHG LVAAHVLAGD AEGAMQSLRR ELSSGVRPLH ETFVALVRVF AKKGLATRGM EILAAMERYK YDIRKAWLIL VEELVNNNYL
201: EDANTVFLKG TEGGLQGTDE IYDLLIEEDC KAGDHSNALT VAYKMEASGR MATTFHFNCL LSVQATCGIP EIAFATFENM EYGGEGYMKP DTESYNWVIQ
301: AFTRATSYDR AGDVAELLGM MVEDHKRIQP NARTYALLVE CFTKYSMVNE AIRHFRALRR IPGGTKVLYN EGNCGDPLSL YLRSLCLDGR ADELLEALEA
401: MSNDGQTIAP RAMILNRKYR TLVSTWIEPL QEEADVGFEI DYVARYIEEG GLTGERKRWV PRRGKTPLDP DEFGFAYSNP IETSFKQRCF EELKLYHRKL
501: LITLRNEGPG ILGDVSEDDV RRVIERLKKL VVGPKKNVVK PKAASKMVVS ELKTELEAQG LPTDGTRQVL YQRVQKARRI NRSRGIPLWV PPVEDEEEVD
601: EELDELISRI KLEDGNTEFW KRRFLGETRN YLCEEVNDEE DADLDDDELD DDDDEDDDDD DTTKGEEDEI DEEDAVEQTE NQAGDETKDK PSKGPKQHLQ
701: MIGVQLLKDL EKTSVSSKKS KRVPEIDDDE DWFPEDPIEA FKVMRETRLF DVSDMYTTAD AWGWTWEREI KNKMPRKWSQ EWEVELAIKI MHKVIDLGGT
801: PTIGDCAIIL RAAMRVPLPS AFMTILQTTH SLGYKFGSPL YDEAILLCLD LEEIDAAIAV VAEMETNGIK VPDETLDKVL AAKQSGGNSA LQPPPAEE

Best Arabidopsis Sequence Match ( AT3G04260.1 )
(BLAST)

001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS

Arabidopsis Description

PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.