CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34179	Soybean	nucleus	96.62	96.62
VIT_04s0043g00700.t01	Wine grape	plastid	76.66	76.92
KRH34172	Soybean	cytosol	8.79	76.47
GSMUA_Achr5P20530_001	Banana	cytosol	48.37	73.97
Solyc04g050540.2.1	Tomato	plastid	74.3	73.96
Zm00001d032790_P002	Maize	cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid	63.7	71.25
GSMUA_Achr5P20540_001	Banana	plastid	23.56	68.98
EER94118	Sorghum	plastid	65.84	65.91
TraesCS1A01G144800.1	Wheat	plastid	65.39	65.69
TraesCS1B01G162100.2	Wheat	plastid	65.39	65.69
TraesCS1D01G143900.1	Wheat	plastid	65.28	65.57
HORVU1Hr1G038620.7	Barley	plastid	65.28	65.5
Os10t0462800-01	Rice	plastid	66.07	65.26

Protein Annotations

Gene3D:1.10.720.30	Gene3D:1.25.40.10	EntrezGene:100807191	MapMan:15.6.1.2.2.1	EMBL:ACUP02012763	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G221100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1NIL0	InterPro:IPR003034
InterPro:IPR011990	InterPro:IPR036361	EnsemblPlants:KRG92602	ProteinID:KRG92602	ProteinID:KRG92602.1	ProteinID:KRG92603.1
PFAM:PF02037	PFscan:PS50800	PANTHER:PTHR31407	PANTHER:PTHR31407:SF5	InterPro:SAP_dom	InterPro:SAP_dom_sf
SMART:SM00513	SUPFAM:SSF68906	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233DD3A	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:-:45601059..45611818

Molecular Weight (calculated)

100652.0 Da

IEP (calculated)

4.671

GRAVY (calculated)

-0.483

Length

887 amino acids

Sequence
(BLAST)

001: MSSLILPYTY TYGYARFPFK LNRFSPRTVT VRAAVSSPDK RGRKKKQAKD DDSAVENGLR FSFMEELMDR ARNRDSNGVS EVMYDMIAAG LSPGPRSFHG
101: LVVSHALNGD EEAAMESLRR ELAAGLRPVH ETFLALIRLF GSKGRATRGL EILAAMEKLN YDIRQAWLIL IEELVWNKHL EDANEVFLKG AKGGLKATDE
201: VYDLLIEEDC KAGDHSNALD IAYEMEAAGR MATTFHFNCL LSVQATCGIP EIAFATFENM EYGEDYMKPD TETYNWVIQA YTRAESYDRV QDVAELLGMM
301: VEDHKRIQPN AKTHALLVEC FTKYCVVREA IRHFRALKNF EGGIKVLHNE GNHGDPLSLY LRALCREGRI VEMLEALEAM AKDNQPIPSR AMILSRKYRT
401: LVSSWIEPLQ EEAELGYEID YISRYIDEGG LTGERKRWVP RRGKTPLDPD AHGFIYSNPM ETSFKQRCLE ELKLHNKKLL KTLQNEGLAA LGDGVSESDY
501: IRVQERLKKL IKGPEQNVLK PKAASKMLVS ELKEELDAQG LPIDGNRNVL YQRVQKARRI NRSRGRPLWV PPVEEEEEEV DEELDALISH IKLEEGNTEF
601: WKRRFLGEGL NGDQEMPTDA AESEVPEVLD DVDAIEDAAK EVEDDEADDD EEEAEQAEEE VEPAENQDVN RIKEKEVEAK RPLQMIGVQL LKDIDQPTAT
701: SKKFKRSRKV QVEDDDDDDW LPLDLFEAFE EMRKRKIFDV SDMYTLADAW GWTWERELKK KPPRRWSQEW EVELAIKVMQ KVIELGGRPT IGDCAMILRA
801: AIRAPLPSAF LTILQTTHSL GFKFGSPLYD EIISLCVDLG ELDAAVAVVA DLETTGISVS DLTLDRVISA KQRIDNTSNG VITDAGL

Best Arabidopsis Sequence Match ( AT3G04260.1 )
(BLAST)

001: MSLLFLNPPF PSNSIHPIPR RAAGISSIRC SISAPEKKPR RRRKQKRGDG AENDDSLSFG SGEAVSALER SLRLTFMDEL MERARNRDTS GVSEVIYDMI
101: AAGLSPGPRS FHGLVVAHAL NGDEQGAMHS LRKELGAGQR PLPETMIALV RLSGSKGNAT RGLEILAAME KLKYDIRQAW LILVEELMRI NHLEDANKVF
201: LKGARGGMRA TDQLYDLMIE EDCKAGDHSN ALDISYEMEA AGRMATTFHF NCLLSVQATC GIPEVAYATF ENMEYGEVFM KPDTETYNWV IQAYTRAESY
301: DRVQDVAELL GMMVEDHKRV QPNVKTYALL VECFTKYCVV KEAIRHFRAL KNFEGGTVIL HNAGNFEDPL SLYLRALCRE GRIVELIDAL DAMRKDNQPI
401: PPRAMIMSRK YRTLVSSWIE PLQEEAELGY EIDYLARYIE EGGLTGERKR WVPRRGKTPL DPDASGFIYS NPIETSFKQR CLEDWKVHHR KLLRTLQSEG
501: LPVLGDASES DYMRVVERLR NIIKGPALNL LKPKAASKMV VSELKEELEA QGLPIDGTRN VLYQRVQKAR RINKSRGRPL WVPPIEEEEE EVDEEVDDLI
601: CRIKLHEGDT EFWKRRFLGE GLIETSVESK ETTESVVTGE SEKAIEDISK EADNEEDDDE EEQEGDEDDD ENEEEEVVVP ETENRAEGED LVKNKAADAK
701: KHLQMIGVQL LKESDEANRT KKRGKRASRM TLEDDADEDW FPEEPFEAFK EMRERKVFDV ADMYTIADVW GWTWEKDFKN KTPRKWSQEW EVELAIVLMT
801: KVIELGGIPT IGDCAVILRA ALRAPMPSAF LKILQTTHSL GYSFGSPLYD EIITLCLDLG ELDAAIAIVA DMETTGITVP DQTLDKVISA RQSNESPRSE
901: PEEPASTVSS

Arabidopsis Description

PTAC3Plastid transcriptionally active 3 [Source:UniProtKB/TrEMBL;Acc:F4J3M2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.