CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70151
CDX98843
CDY04950
CDY52149

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27750.1	CDX70151	AT5G05410.1	18552202
AT4G27750.1	CDX98843	AT5G05410.1	18552202
AT4G27750.1	CDY04950	AT5G05410.1	18552202
AT4G27750.1	CDY52149	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026309.1-P	Field mustard	cytosol	100.0	100.0
CDY19027	Canola	cytosol	99.02	99.02
AT4G27750.1	Thale cress	cytosol	94.75	94.75
PGSC0003DMT400047652	Potato	cytosol	69.84	72.45
Solyc03g082820.2.1	Tomato	cytosol	69.18	71.77
VIT_16s0098g01400.t01	Wine grape	cytosol	69.84	71.48
KRH24013	Soybean	cytosol	66.89	67.77
KRH29305	Soybean	cytosol	71.15	65.56
PGSC0003DMT400047651	Potato	mitochondrion	34.75	64.63
KRG89489	Soybean	cytosol, extracellular, vacuole	17.05	63.41
HORVU7Hr1G011300.2	Barley	cytosol	51.15	61.42
GSMUA_Achr1P07860_001	Banana	cytosol	60.98	60.59
TraesCS7A01G061200.1	Wheat	cytosol	55.08	57.73
TraesCS4A01G428600.1	Wheat	cytosol	54.1	56.7
Os06t0129300-01	Rice	cytosol	54.75	55.3
EER89112	Sorghum	nucleus	53.44	54.88
Zm00001d045493_P002	Maize	mitochondrion	52.79	54.21
KRH71932	Soybean	cytosol	25.9	47.88
KRG94018	Soybean	cytosol, golgi, plasma membrane	20.98	40.76

Protein Annotations

EnsemblPlants:CDX89229	EnsemblPlantsGene:GSBRNA2T00149418001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Cell_div_Cdc14	InterPro:IPR011989	PANTHER:PTHR34065	PANTHER:PTHR34065:SF2	PFAM:PF08045
ProteinID:CDX89229	ProteinID:CDX89229.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI0002543F19	MapMan:35.2

Description

BnaA01g16640D

Coordinates

chrLK031858:-:265404..267034

Molecular Weight (calculated)

33569.3 Da

IEP (calculated)

5.092

GRAVY (calculated)

-0.068

Length

305 amino acids

Sequence
(BLAST)

001: MYLKKPIWSD GPSATPENPS GSENGEETDA ATMVVEELVT SLNTQRLYRE LTLSLRTGLR DACAEFSFLR IRGLRSLLKT LRSIAESDSI IRLFSHTQTV
101: SDLQLVPVLF RHSLKEGEDD RVTSLDHIFS VEPMKITSPS TDDEVAVALR VLEGCCLLHP QSTVLAHKHG AVRVMMNILS TRGVLEQGAC LDALISILLD
201: SSANQVDFGA CNGIEEVAML MRDKQADENL RLRCGEFLLL LVGHVNGKDR SPIASVNEDI RRLLGEKSAS LIWAASQFGS TGDPEQRITA LHIQAGRVLE
301: SLDLY

Best Arabidopsis Sequence Match ( AT4G27750.1 )
(BLAST)

001: MYLKRPIWSD GASATPENPS ESETGEESDA ASMVVEELVT SLNTQRLYRE LTLSLRTGLR DACAEFSFLR IRGLRSLLKT LRTVADSDSI IRLFSHTQTI
101: SDLQLVPVLF QHSLKEAEDD KVTSLDHIFS VEPMKITSPS TDAEVAVALR VLEGCCLLHP QSTVLAHKHG AVRVMMNVLS TRGVLEQGAC LDALISVLLD
201: SSANQVDFGA CNGIEEVAML MRDKQADENL RLRCGEFLLL LVGHVNGKDR SPIASVNEDI RRLLGEKSAS LIWAASQFGS TGDPEQRITA LHIQAGRVLE
301: SLDLY

Arabidopsis Description

ISI1ISI1 [Source:UniProtKB/TrEMBL;Acc:A0A178URL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.