CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG21735

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27750.1	KXG21735	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045493_P002	Maize	mitochondrion	97.98	97.98
HORVU7Hr1G011300.2	Barley	cytosol	77.1	90.16
TraesCS7A01G061200.1	Wheat	cytosol	83.17	84.88
TraesCS4A01G428600.1	Wheat	cytosol	82.15	83.85
Os06t0129300-01	Rice	cytosol	85.19	83.77
GSMUA_Achr1P07860_001	Banana	cytosol	63.64	61.56
VIT_16s0098g01400.t01	Wine grape	cytosol	59.26	59.06
PGSC0003DMT400047652	Potato	cytosol	57.58	58.16
Solyc03g082820.2.1	Tomato	cytosol	57.24	57.82
KRH24013	Soybean	cytosol	58.25	57.48
PGSC0003DMT400047651	Potato	mitochondrion	30.98	56.1
KRG89489	Soybean	cytosol, extracellular, vacuole	15.15	54.88
AT4G27750.1	Thale cress	cytosol	55.22	53.77
KRH29305	Soybean	cytosol	59.6	53.47
Bra026309.1-P	Field mustard	cytosol	54.88	53.44
CDY19027	Canola	cytosol	54.88	53.44
CDX89229	Canola	cytosol	54.88	53.44
OQU92285	Sorghum	extracellular	26.94	45.45
KRH71932	Soybean	cytosol	21.55	38.79
KRG94018	Soybean	cytosol, golgi, plasma membrane	19.19	36.31

Protein Annotations

EnsemblPlants:EER89112	EnsemblPlantsGene:SORBI_3010G018800	EntrezGene:8068375	GO:GO:0003674	GO:GO:0005488	GO:GO:0005975
GO:GO:0006109	GO:GO:0008150	GO:GO:0008152	InterPro:ARM-type_fold	InterPro:Cell_div_Cdc14	PANTHER:PTHR34065
PANTHER:PTHR34065:SF2	PFAM:PF08045	ProteinID:EER89112	ProteinID:EER89112.1	RefSeq:XP_002437745.1	SEG:seg
SUPFAM:SSF48371	unigene:Sbi.5526	UniParc:UPI0001A89A4F	UniProt:C5Z387	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr10:-:1549631..1552962

Molecular Weight (calculated)

32699.4 Da

IEP (calculated)

6.866

GRAVY (calculated)

-0.124

Length

297 amino acids

Sequence
(BLAST)

001: MSRKEAEPAG QDGSSSSATD GAGGSGSGRE LADALARRRL YREVTLALRS GLRDAKADFS FLRARGLRSL LGFLRSTASA ADDARLLLFR HSQSIPDLQV
101: IPVLFQNSLH QPKQDPVVTL DHIFGTEPMK ITSPPTDSEI ALALRVLEGC CLLYSRCTAL AHKYKAVKVL LNILASRGPA EQGVCLDTLI SLMLDSPSNQ
201: MDFEEYSGLE KVAELLKDVQ VEKHIRLKCG EFLLLLIGHV YVKENSPIHE QMKNLFGEQC ASLIWAASRF GSTLDAEQRQ TTLQIQAMRV VESLEPY

Best Arabidopsis Sequence Match ( AT4G27750.1 )
(BLAST)

001: MYLKRPIWSD GASATPENPS ESETGEESDA ASMVVEELVT SLNTQRLYRE LTLSLRTGLR DACAEFSFLR IRGLRSLLKT LRTVADSDSI IRLFSHTQTI
101: SDLQLVPVLF QHSLKEAEDD KVTSLDHIFS VEPMKITSPS TDAEVAVALR VLEGCCLLHP QSTVLAHKHG AVRVMMNVLS TRGVLEQGAC LDALISVLLD
201: SSANQVDFGA CNGIEEVAML MRDKQADENL RLRCGEFLLL LVGHVNGKDR SPIASVNEDI RRLLGEKSAS LIWAASQFGS TGDPEQRITA LHIQAGRVLE
301: SLDLY

Arabidopsis Description

ISI1ISI1 [Source:UniProtKB/TrEMBL;Acc:A0A178URL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.