Factsheet for Zm00001d045493_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010048_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27750.1	Zm00001d010048_P004	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89112	Sorghum	nucleus	97.98	97.98
HORVU7Hr1G011300.2	Barley	cytosol	76.43	89.37
TraesCS7A01G061200.1	Wheat	cytosol	82.49	84.19
TraesCS4A01G428600.1	Wheat	cytosol	81.48	83.16
Os06t0129300-01	Rice	cytosol	83.5	82.12
GSMUA_Achr1P07860_001	Banana	cytosol	63.3	61.24
VIT_16s0098g01400.t01	Wine grape	cytosol	58.59	58.39
PGSC0003DMT400047652	Potato	cytosol	56.9	57.48
Solyc03g082820.2.1	Tomato	cytosol	56.57	57.14
KRH24013	Soybean	cytosol	57.58	56.81
KRG89489	Soybean	cytosol, extracellular, vacuole	15.15	54.88
PGSC0003DMT400047651	Potato	mitochondrion	30.3	54.88
AT4G27750.1	Thale cress	cytosol	54.55	53.11
KRH29305	Soybean	cytosol	58.92	52.87
Bra026309.1-P	Field mustard	cytosol	54.21	52.79
CDY19027	Canola	cytosol	54.21	52.79
CDX89229	Canola	cytosol	54.21	52.79
Zm00001d029651_P001	Maize	plastid	44.78	45.86
KRH71932	Soybean	cytosol	21.21	38.18
KRG94018	Soybean	cytosol, golgi, plasma membrane	18.86	35.67

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100272392	MapMan:35.2	ProteinID:AQL02404.1	InterPro:ARM-like	InterPro:ARM-type_fold
UniProt:B4FND2	EMBL:BT038620	InterPro:Cell_div_Cdc14	GO:GO:0003674	GO:GO:0005488	GO:GO:0005975
GO:GO:0006109	GO:GO:0008150	GO:GO:0008152	InterPro:IPR011989	PFAM:PF08045	PANTHER:PTHR34065
PANTHER:PTHR34065:SF2	SUPFAM:SSF48371	UniParc:UPI00017B6BF2	EnsemblPlantsGene:Zm00001d045493	EnsemblPlants:Zm00001d045493_P002	EnsemblPlants:Zm00001d045493_T002
SEG:seg	:	:	:	:	:

Description

binding

Coordinates

chr9:+:24426037..24430108

Molecular Weight (calculated)

32579.3 Da

IEP (calculated)

6.713

GRAVY (calculated)

-0.083

Length

297 amino acids

Sequence
(BLAST)

001: MSRKEAEPAG QDGSSSSATD GGGGSGSGRE LADALARRRL YREVTLALHS GLRDAKADFS FLRARGLRSL LGFLRSTASA ADDALLLLFR HSQSIPDLQV
101: IPVLFQNSLH QPKQDPVVTL DHIFGTEPMK ITSPPTGSEI ALALRVLEGC CLLYSRCTAL AHKYKAVKVL LNILASRGPT EQGVCLDTLI SLMLDSPSNQ
201: MDFEEYSGLE KVAELLKDVQ VEKHIRLKCG EFLLLLIGHV FVKENSPIHE QMKNLFGEQC ASLIWAASRF GSTLDAEQRQ TTLQIQAMRV VESLEPY

Best Arabidopsis Sequence Match ( AT4G27750.1 )
(BLAST)

001: MYLKRPIWSD GASATPENPS ESETGEESDA ASMVVEELVT SLNTQRLYRE LTLSLRTGLR DACAEFSFLR IRGLRSLLKT LRTVADSDSI IRLFSHTQTI
101: SDLQLVPVLF QHSLKEAEDD KVTSLDHIFS VEPMKITSPS TDAEVAVALR VLEGCCLLHP QSTVLAHKHG AVRVMMNVLS TRGVLEQGAC LDALISVLLD
201: SSANQVDFGA CNGIEEVAML MRDKQADENL RLRCGEFLLL LVGHVNGKDR SPIASVNEDI RRLLGEKSAS LIWAASQFGS TGDPEQRITA LHIQAGRVLE
301: SLDLY

Arabidopsis Description

ISI1ISI1 [Source:UniProtKB/TrEMBL;Acc:A0A178URL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.