Factsheet for TraesCS4A01G428600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G221900.1
TraesCS1B01G235100.2
TraesCS1D01G223600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27750.1	TraesCS1A01G221900.1	AT5G05410.1	18552202
AT4G27750.1	TraesCS1B01G235100.2	AT5G05410.1	18552202
AT4G27750.1	TraesCS1D01G223600.2	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G011300.2	Barley	cytosol	85.91	98.43
TraesCS7A01G061200.1	Wheat	cytosol	96.56	96.56
EER89112	Sorghum	nucleus	83.85	82.15
Zm00001d045493_P002	Maize	mitochondrion	83.16	81.48
Os06t0129300-01	Rice	cytosol	84.19	81.13
GSMUA_Achr1P07860_001	Banana	cytosol	63.57	60.26
VIT_16s0098g01400.t01	Wine grape	cytosol	61.51	60.07
PGSC0003DMT400047652	Potato	cytosol	59.79	59.18
Solyc03g082820.2.1	Tomato	cytosol	59.45	58.84
KRH24013	Soybean	cytosol	60.82	58.8
PGSC0003DMT400047651	Potato	mitochondrion	32.3	57.32
AT4G27750.1	Thale cress	cytosol	57.73	55.08
KRG89489	Soybean	cytosol, extracellular, vacuole	15.46	54.88
CDY19027	Canola	cytosol	57.04	54.43
CDX89229	Canola	cytosol	56.7	54.1
Bra026309.1-P	Field mustard	cytosol	56.7	54.1
KRH29305	Soybean	cytosol	60.14	52.87
KRH71932	Soybean	cytosol	23.02	40.61
KRG94018	Soybean	cytosol, golgi, plasma membrane	20.27	37.58

Protein Annotations

EnsemblPlants:TraesCS4A01G428600.1	EnsemblPlantsGene:TraesCS4A01G428600	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Cell_div_Cdc14	InterPro:IPR011989	PANTHER:PTHR34065	PFAM:PF08045	SEG:seg
SUPFAM:SSF48371	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:699793967..699796519

Molecular Weight (calculated)

32011.6 Da

IEP (calculated)

5.921

GRAVY (calculated)

-0.079

Length

291 amino acids

Sequence
(BLAST)

001: MSRKEAEAGG GEGSSSRAEG GGELAEALAR RRLYREVTLA LRAGLRDAGA DFSFLRARGL RGLLGFLRAT AAAPDDSQQQ LLLFRHSQSI PDLQVIPVLF
101: QNSLHQPKDT VATLDHIFGV EPTKITSPST DSEIALALRV LEGCCLLYSR CTALAHKYKA VQVLLNILAS RGPTEQGVCL DALISLMLDS PSNQIDFEEY
201: SGLEKVAELL KDVQVEEHIR LKCGEFLLLL IGHVYVKENT PIHEQMRNLL GEQCASLIWA ASRFGSTLDA DQRQMALQIQ ARRVVESLEP Y

Best Arabidopsis Sequence Match ( AT4G27750.1 )
(BLAST)

001: MYLKRPIWSD GASATPENPS ESETGEESDA ASMVVEELVT SLNTQRLYRE LTLSLRTGLR DACAEFSFLR IRGLRSLLKT LRTVADSDSI IRLFSHTQTI
101: SDLQLVPVLF QHSLKEAEDD KVTSLDHIFS VEPMKITSPS TDAEVAVALR VLEGCCLLHP QSTVLAHKHG AVRVMMNVLS TRGVLEQGAC LDALISVLLD
201: SSANQVDFGA CNGIEEVAML MRDKQADENL RLRCGEFLLL LVGHVNGKDR SPIASVNEDI RRLLGEKSAS LIWAASQFGS TGDPEQRITA LHIQAGRVLE
301: SLDLY

Arabidopsis Description

ISI1ISI1 [Source:UniProtKB/TrEMBL;Acc:A0A178URL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.