Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87654 | Canola | nucleus | 83.09 | 82.21 |
| CDY44203 | Canola | nucleus | 43.17 | 44.94 |
| CDY29373 | Canola | mitochondrion, nucleus | 42.81 | 43.75 |
| CDX76272 | Canola | cytosol | 5.76 | 43.24 |
| AT1G75860.2 | Thale cress | endoplasmic reticulum, plastid, vacuole | 56.12 | 41.38 |
| CDY43413 | Canola | nucleus | 41.37 | 41.22 |
| CDY17987 | Canola | plastid | 21.58 | 41.1 |
| CDX76271 | Canola | extracellular | 19.78 | 33.33 |
| CDX96256 | Canola | extracellular, plastid | 19.42 | 28.88 |
| CDX96257 | Canola | cytosol, nucleus, vacuole | 3.6 | 24.39 |
Protein Annotations
| EnsemblPlants:CDX73209 | EnsemblPlantsGene:GSBRNA2T00103702001 | PANTHER:PTHR34660 | PANTHER:PTHR34660:SF1 | ProteinID:CDX73209 | ProteinID:CDX73209.1 |
| SEG:seg | UniParc:UPI0004EE44B2 | MapMan:35.2 | : | : | : |
Description
BnaC06g36570D
Coordinates
chrLK031797:-:2692966..2694915
Molecular Weight (calculated)
30849.2 Da
IEP (calculated)
10.129
GRAVY (calculated)
-0.957
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSIVIARNQ ASGQNLVDST KLARIVNDSK TSLPKEKKDK KERRKHKTEK REKSHRHSSK KSSKSPGVSE KSGVTEELEG PQNHLGYLSD GSQNSNKRKR
101: DVSPPAVESL IKVVPVAGKS LRIRLTFKKP KVESPLPQED VVSCSTSGSE SLNPARSTAL IEETKKICEP EVNVPSTSEA AIAGEVKKRR KHKPSKEDRY
201: NALFDDWTPI STTAMEVDSS SKDDDDWLFG GSRTKERRNC KAANKIDEDV RASCDSSWPK AQFPSQVGIY SLPYTVPF
101: DVSPPAVESL IKVVPVAGKS LRIRLTFKKP KVESPLPQED VVSCSTSGSE SLNPARSTAL IEETKKICEP EVNVPSTSEA AIAGEVKKRR KHKPSKEDRY
201: NALFDDWTPI STTAMEVDSS SKDDDDWLFG GSRTKERRNC KAANKIDEDV RASCDSSWPK AQFPSQVGIY SLPYTVPF
001: MSRVLTCPPL VFARNHVGVQ NLVESTKLKR ITLDSKKAHR IEKKEKKEKR KEKKETKREK SHKHSIKATD NHHKLIFLPS KKVSDESDSL EKSGLTDELE
101: EPQKHLGYLS DGSQNSKKRI RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI
201: AAIDETKKRK KHRSSKEDQY NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
101: EPQKHLGYLS DGSQNSKKRI RDDSPPAVES LIKAAPVAGK PLRIRMVFKK PKEEVPTLPR EAVVCSTTVA KSLSHQDVIT SSISSSKTSE LEKNLPSTSI
201: AAIDETKKRK KHRSSKEDQY NALFDGWTPP SMCIADASSN DNGDYWLFGN KTQEVLKPKA AVKVDDDTMM RPGDSSWPRA QFLSEVGIYS LPYTVPF
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits to 235 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other Eukaryotes - 89 (s /.../ NCBI BLink). [Source:TAIR;Acc:AT1G75860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.