Factsheet for Os03t0298800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0691700-01	Rice	nucleus	3.88	1.06
Os01t0208600-01	Rice	cytosol	5.6	0.97
Os03t0817000-01	Rice	cytosol	1.72	0.9
Os03t0298700-01	Rice	cytosol	3.88	0.69
Os03t0816900-01	Rice	golgi	1.29	0.26

Protein Annotations

MapMan:16.4.1.2.2	Gene3D:3.30.70.330	EntrezGene:4332557	ProteinID:ABF95464.1	ProteinID:ABF95465.1	EMBL:AK103337
ProteinID:BAF11760.1	ProteinID:BAS83746.1	ncoils:Coil	ProteinID:EEE58889.1	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005681	GO:GO:0005686	GO:GO:0005737	GO:GO:0006139
GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0015030
GO:GO:0035614	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os03g0298800	EnsemblPlants:Os03t0298800-01
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR10501	PANTHER:PTHR10501:SF32	UniProt:Q10MR0	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0000DB45CA	RefSeq:XP_015628121.1	RefSeq:XP_015628122.1
SEG:seg	:	:	:	:	:

Description

Similar to Spliceosomal protein. (Os03t0298800-01)

Coordinates

chr3:-:10478466..10482571

Molecular Weight (calculated)

26102.3 Da

IEP (calculated)

9.898

GRAVY (calculated)

-0.628

Length

232 amino acids

Sequence
(BLAST)

001: MLSGDIPPNQ TVYLRNLNEK VKKEELKRSL YALCSQYGRI LDVVALKTPK LRGQAWVVFS EITAATNAFR GLQEFDFYGK RMRVQYAKTR SDCLATEDGS
101: TAPKEKRKKQ EEKAAEKKRR AEEAQQSGPN AAAQSNGTGY QASRLGKTSQ EPPAPPNNIL FIQNLPAETT SMMLQILFQQ YPGFREVRMI EAKPGIAFVE
201: YEDDSQSMVA MQALQGFKIT PYNPMAISYA KK

Best Arabidopsis Sequence Match ( AT2G30260.1 )
(BLAST)

001: MLTADIPPNQ SIYIQNLNER IKKEELKRSL YCLFSQFGRI LDVVALKTPK LRGQAWVTFS EVTAAGHAVR QMQNFPFYDK PMRLQYAKAK SDCLAKAEGT
101: FVPKDKKRKQ EEKVERKRED SQRPNTANGP SANGPSANNG VPAPSFQPSG QETMPPNNIL FIQNLPHETT SMMLQLLFEQ YPGFKEIRMI DAKPGIAFVE
201: YEDDVQASIA MQPLQGFKIT PQNPMVISFA KK

Arabidopsis Description

U2B''U2 small nuclear ribonucleoprotein B'' [Source:UniProtKB/Swiss-Prot;Acc:O22922]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.