Factsheet for Solyc12g035450.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g006520.1.1	Tomato	cytosol	66.28	16.33
Solyc12g006530.1.1	Tomato	cytosol	72.09	16.29
CDY20916	Canola	cytosol	22.67	15.41
Solyc12g006510.1.1	Tomato	cytosol	66.86	15.25
AT1G78950.2	Thale cress	cytosol, plasma membrane, plastid	62.79	14.06
CDX87420	Canola	cytosol	62.21	13.93
AT1G78955.1	Thale cress	cytosol	62.21	13.91
CDX79277	Canola	cytosol	55.23	13.83
CDX88493	Canola	cytosol	62.21	13.75
Bra035079.1-P	Field mustard	cytosol	60.47	13.59
CDX87419	Canola	cytosol	60.47	13.59
CDY57947	Canola	cytosol	59.88	13.43
AT1G78970.1	Thale cress	cytosol	58.72	13.34
Bra003630.1-P	Field mustard	cytosol	59.3	13.3
CDX88494	Canola	endoplasmic reticulum, plasma membrane	59.88	13.27
AT1G78960.2	Thale cress	cytosol	58.72	13.24
Solyc07g042630.2.1	Tomato	cytosol	54.65	12.43
Bra026038.1-P	Field mustard	cytosol	54.65	12.42
AT1G66960.2	Thale cress	mitochondrion	55.23	12.31
CDY72111	Canola	cytosol	29.07	12.14
CDY35103	Canola	mitochondrion	54.65	11.93
Solyc05g047580.2.1	Tomato	cytosol	50.0	11.76
Solyc04g070980.2.1	Tomato	plastid	46.51	10.53
EES13537	Sorghum	cytosol	43.02	9.71
TraesCS4A01G495100.1	Wheat	cytosol	42.44	9.64
TraesCS7A01G003500.1	Wheat	cytosol	41.86	9.49
Os08t0223900-00	Rice	cytosol	43.02	9.43
TraesCS7D01G004000.1	Wheat	cytosol	41.28	9.35
HORVU7Hr1G000400.1	Barley	cytosol, plastid	39.53	9.23
Zm00001d024337_P001	Maize	cytosol	27.91	6.64
Solyc12g035440.1.1	Tomato	cytosol	2.33	4.6
Solyc04g050670.1.1	Tomato	cytosol	4.07	4.32
Solyc12g035460.1.1	Tomato	cytosol	0.58	0.44

Protein Annotations

EnsemblPlants:Solyc12g035450.1.1	EnsemblPlantsGene:Solyc12g035450.1	Gene3D:1.50.10.20	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:SQ_cyclase_N	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	PFAM:PF13249	SUPFAM:SSF48239
TMHMM:TMhelix	UniParc:UPI0002769E75	UniProt:K4DE06	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr12:-:58339300..58340671

Molecular Weight (calculated)

20808.6 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.119

Length

172 amino acids

Sequence
(BLAST)

001: MRILGEEPDG GEIMCVLEQG NGFLIMVVSL QFLLWGTWLS ILGAFEWLGT NPMPPEFWIL PYFLPMHPAK MWCYSRMVYM PMFYLYRKRF EDLYYPHPWV
101: QDLMWDSLYM CKEPLLTQWL FNKLRNKDLE VYMKHVHYED GNSLYITVGC VNKDPNGSYF KKRLARIQEY LW

Best Arabidopsis Sequence Match ( AT1G78950.1 )
(BLAST)

001: MWRLKIGEGN GDDPYLFTTN NFAGRQTWEF DPDGGSPEER HSVVEARRIF YDNRFHVKAS SDLLWRMQFL REKKFEQRIA PVKVEDSEKV TFETATSALR
101: RGIHFFSALQ ASDGHWPAEN AGPLFFLPPL VFCLYITGHL DEVFTSEHRK EILRYIYCHQ KEDGGWGLHI EGHSTMFCTT LNYICMRILG ESPDGGHDNA
201: CGRAREWILS HGGVTYIPSW GKTWLSILGV FDWSGSNPMP PEFWILPSFF PVHPAKMWSY CRMVYLPMSY LYGKRFVGPI TSLILQLRKE LYLQPYEEIN
301: WMKVRHLCAK EDTYYPRPLV QELVWDSLYI FAEPFLARWP FNKLLREKAL QLAMKHIHYE DENSRYITIG CVEKVLCMLA CWVEDPNGDY FKKHLSRISD
401: YLWMAEDGMK MQSFGSQLWD TGFAMQALLA SNLSSEISDV LRRGHEFIKN SQVGENPSGD YKSMYRHISK GAWTFSDRDH GWQVSDCTAH GLKCCLLFSM
501: LAPDIVGPKQ DPERLHDSVN ILLSLQSKNG GMTAWEPAGA PKWLELLNPT EMFSDIVIEH EYSECTSSAI QALSLFKQLY PDHRTTEITA FIKKAAEYLE
601: NMQTRDGSWY GNWGICFTYG TWFALAGLAA AGKTFNDCEA IRKGVQFLLA AQKDNGGWGE SYLSCSKKIY IAQVGEISNV VQTAWALMGL IHSGQAERDP
701: IPLHRAAKLI INSQLESGDF PQQQATGVFL KNCTLHYAAY RNIHPLWALA EYRARVSLP

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.