CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum

Predictor Summary:

cytosol 2
extracellular 3
golgi 3
plasma membrane 4
endoplasmic reticulum 4
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87419	Canola	cytosol	93.3	94.64
CDY57947	Canola	cytosol	88.53	89.57
CDX79277	Canola	cytosol	77.32	87.34
CDY40048	Canola	cytosol	9.02	86.42
CDY72111	Canola	cytosol	38.92	73.3
CDX87420	Canola	cytosol	71.39	72.14
CDX88493	Canola	cytosol	71.52	71.34
CDY35103	Canola	mitochondrion	71.65	70.56
CDY20917	Canola	cytosol	35.44	67.07
CDY20916	Canola	cytosol	21.65	66.4
Solyc12g035450.1.1	Tomato	cytosol, plasma membrane, plastid	13.27	59.88
CDY49432	Canola	cytosol	53.99	57.63
CDY52589	Canola	cytosol	53.87	57.5
CDY50938	Canola	cytosol	56.44	57.41
CDX93093	Canola	cytosol	56.7	57.29
CDX77512	Canola	cytosol	56.06	55.98
CDY38925	Canola	cytosol, nucleus, plasma membrane	53.09	55.98
CDX85104	Canola	cytosol	55.03	55.89
Solyc12g035460.1.1	Tomato	cytosol	16.11	55.56
CDY29797	Canola	cytosol	52.96	54.01
CDX89541	Canola	cytosol	10.18	53.74
CDY25392	Canola	cytosol	52.45	53.48
CDY25386	Canola	cytosol, plasma membrane, plastid	40.21	53.24
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	34.41	52.87
CDX85103	Canola	cytosol	7.22	52.83
TraesCS4A01G495100.1	Wheat	cytosol	51.03	52.31
TraesCS7D01G004000.1	Wheat	cytosol	50.13	51.25
TraesCS7A01G003500.1	Wheat	cytosol	49.87	50.99
Os08t0223900-00	Rice	cytosol	50.64	50.06
EES13537	Sorghum	cytosol	48.97	49.87
CDY08878	Canola	cytosol	11.6	48.65
HORVU7Hr1G000400.1	Barley	cytosol, plastid	46.01	48.44
Zm00001d024337_P001	Maize	cytosol	45.1	48.41
CDY34478	Canola	cytosol, extracellular	23.07	47.99
CDY29789	Canola	cytosol	5.93	46.94
CDY63677	Canola	cytosol	4.9	40.0

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	GO:A0A078DIX9	EnsemblPlants:CDX88494	ProteinID:CDX88494	ProteinID:CDX88494.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0016866	EnsemblPlantsGene:GSBRNA2T00148042001	PFAM:PF13243	PFAM:PF13249
ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	SUPFAM:SSF48239
InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0004EEBB9D	SEG:seg

Description

BnaC06g39380D

Coordinates

chrLK031855:+:1280932..1286705

Molecular Weight (calculated)

89480.4 Da

IEP (calculated)

6.714

GRAVY (calculated)

-0.288

Length

776 amino acids

Sequence
(BLAST)

001: MYVYIHRIIV VMWKLKIAEG NGEDPYLFSS NNFVGRQTWE FDPKAGTAEE RAAVEEARRH FLINRSRVKG CSDIVWRMQF LKEARFEQAI PPVKIDGNES
101: ITHEKATDAL RRGVSFFSAL QASDGHWPGE ITGPLFFLPP LVFCLYITGH LEKVFDEEHR KEMLRHVYCH QNEDGGWGLH IEGRSIMFCT ALNYICLRIL
201: GEGPNGGREN ACKRARQWIL DRGGVTYIPS WGKIWLSILG LYDWSGTNPM PPEIWLLPSF LPIHLAKTLC YTRMVYMPMS YLYGKRFVGP ITPLILQLRD
301: ELHLQPYEEI NWNKTRRLYA KEDMYFHHPL AQDLVWDALY VVVEPFLTRW PLNKLVREKA LRLAMKHIHY EDENSHYITI GCVEKVLFML ACWIEDPNGD
401: YFKKHLARIP DYMWVAEDGL KMQSFGSQLW DTGFAVQAIL SSNLFDETGN VLNKGHDYIK KSQVRENPSG DFKSMYRHNS KGAWTLSDRD HGWQVSDCTA
501: EALKCCLLLS TMPAEVVGQK MDPEQIYDSV NLLLSFQSEN GGVTAWEPVR AYEWIELLNP TEFLSNLMAE REYVECTSSV IQALVLFKQL YPDYKTKEIS
601: RSIEKAVQFI ENEQTQDGSW YGNWGVCFIY GTWFALAGLA AAGKTYKTSL AMRKGVEFLL RTQKDDGGWG ESYLSCPEQR YIPSEGKISN LVQTAWAVMG
701: LVHAGQAERD PTPLHRAAKI IINSQMENGD FPQQEIVGVF MRNCLIHYAT YRNTFPLWAL AEYRKATFPT HQQLLQ

Best Arabidopsis Sequence Match ( AT1G78960.2 )
(BLAST)

001: MWKLKIGEGN GEDPYLFSSN NFVGRQTWEF DPKAGTPEER AAVEDARRNY LDNRPRVKGC SDLLWRMQFL KEAKFEQVIP PVKIDDGEGI TYKNATDALR
101: RAVSFYSALQ SSDGHWPAEI TGTLFFLPPL VFCFYITGHL EKIFDAEHRK EMLRHIYCHQ NEDGGWGLHI EGKSVMFCTV LNYICLRMLG EGPNGGRNNA
201: CKRARQWILD HGGVTYIPSW GKIWLSILGI YDWSGTNPMP PEIWLLPSFF PIHLGKTLCY TRMVYMPMSY LYGKRFVGPL TPLIMLLRKE LHLQPYEEIN
301: WNKARRLCAK EDMIYPHPLV QDLLWDTLHN FVEPILTNWP LKKLVREKAL RVAMEHIHYE DENSHYITIG CVEKVLCMLA CWIENPNGDH FKKHLARIPD
401: FMWVAEDGLK MQSFGSQLWD TVFAIQALLA CDLSDETDDV LRKGHSFIKK SQVRENPSGD FKSMYRHISK GAWTLSDRDH GWQVSDCTAE ALKCCMLLSM
501: MPAEVVGQKI DPEQLYDSVN LLLSLQGEKG GLTAWEPVRA QEWLELLNPT DFFTCVMAER EYVECTSAVI QALVLFKQLY PDHRTKEIIK SIEKGVQFIE
601: SKQTPDGSWH GNWGICFIYA TWFALSGLAA AGKTYKSCLA VRKGVDFLLA IQEEDGGWGE SHLSCPEQRY IPLEGNRSNL VQTAWAMMGL IHAGQAERDP
701: TPLHRAAKLI ITSQLENGDF PQQEILGVFM NTCMLHYATY RNIFPLWALA EYRKAAFATH QDL

Arabidopsis Description

LUP2Amyrin synthase LUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.