CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035079.1-P	Field mustard	cytosol	99.48	99.48
CDX88494	Canola	endoplasmic reticulum, plasma membrane	94.64	93.3
CDY57947	Canola	cytosol	90.72	90.48
CDX79277	Canola	cytosol	78.95	87.92
CDY40048	Canola	cytosol	9.02	85.19
CDY72111	Canola	cytosol	40.39	75.0
CDX87420	Canola	cytosol	72.94	72.66
CDX88493	Canola	cytosol	73.07	71.85
CDY35103	Canola	mitochondrion	73.73	71.57
CDY20917	Canola	cytosol	35.29	65.85
CDY20916	Canola	cytosol	21.7	65.61
Solyc12g035450.1.1	Tomato	cytosol, plasma membrane, plastid	13.59	60.47
CDY50938	Canola	cytosol	58.69	58.85
CDX93093	Canola	cytosol	58.69	58.46
CDY49432	Canola	cytosol	55.16	58.05
CDY52589	Canola	cytosol	55.03	57.91
Solyc12g035460.1.1	Tomato	cytosol	16.99	57.78
CDX77512	Canola	cytosol	57.91	57.01
CDX85104	Canola	cytosol	56.86	56.94
CDY38925	Canola	cytosol, nucleus, plasma membrane	54.38	56.52
CDX89541	Canola	cytosol	10.59	55.1
CDY29797	Canola	cytosol	53.86	54.14
CDX85103	Canola	cytosol	7.45	53.77
CDY25392	Canola	cytosol	53.46	53.75
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	35.42	53.66
CDY25386	Canola	cytosol, plasma membrane, plastid	40.78	53.24
TraesCS4A01G495100.1	Wheat	cytosol	52.16	52.71
TraesCS7D01G004000.1	Wheat	cytosol	51.76	52.17
TraesCS7A01G003500.1	Wheat	cytosol	51.63	52.04
CDY08878	Canola	cytosol	12.42	51.35
Os08t0223900-00	Rice	cytosol	52.42	51.08
EES13537	Sorghum	cytosol	50.07	50.26
HORVU7Hr1G000400.1	Barley	cytosol, plastid	47.71	49.53
Zm00001d024337_P001	Maize	cytosol	46.67	49.38
CDY34478	Canola	cytosol, extracellular	23.01	47.19
CDY29789	Canola	cytosol	6.01	46.94
CDY63677	Canola	cytosol	5.23	42.11

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	GO:A0A078DG84	EnsemblPlants:CDX87419	ProteinID:CDX87419	ProteinID:CDX87419.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0016866	EnsemblPlantsGene:GSBRNA2T00146396001	PFAM:PF13243	PFAM:PF13249
ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	SUPFAM:SSF48239
InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0004EE5C78	SEG:seg

Description

BnaA07g34540D

Coordinates

chrLK031850:-:546927..551265

Molecular Weight (calculated)

87927.8 Da

IEP (calculated)

6.835

GRAVY (calculated)

-0.278

Length

765 amino acids

Sequence
(BLAST)

001: MWKLKIGEGN GEDPYLFSSN NFVGRQTWEF DPKAGTAEER AAVEEARRHF LINRSRVKGC SDLVWRMQFL KEARFEQAIP PVKIDGNESI THEKSTDALR
101: RGVSFFSALQ ASDGHWPGEI TGPLFFLPPL VFCLYITGHL EKVFDEEHRK EMLRHVYCHQ NEDGGWGLHI EGRSIMFCTA LNYICLRILG EGPNGGGENA
201: CKRARKWILD RGGVTYIPSW GKIWLSILGL YDWSGTNPMP PEIWLLPSFL PIHLAKTLCY CRMVYMPMSY LYGKRFVGPV TPLILQLRDE LHLQPYEEIN
301: WNKTRRLYAK EDMYFPHPLI QDLVWDALYI LVEPVLTRWP LNKLVREKAL RLAMKHIHYE DENSHYITIG CVEKVLCMLA CWIENPNGDY FKKHLARIPD
401: YMWVAEDGMK MQSFGSQLWD TGFAVQAILA SELFDETGNV LKKGHDYIKK SQVRENPSGD FKSMYRHISK GAWTLSDRDH GWQVSDCTAE ALKCCLLLSM
501: MPAEVVGQGI DPEQIYDSVN LLLSFQSENG GMTAWEPVRA YEWIEFLNPT EFLANLVAER EYVECTSSVI QALILFKQLY PDHRTKEISR SIEKAVQFIE
601: NEQTPDGSWY GNWGVCFIYG TWFALVGLAA AGKTYKTSPA MRKGVEFLLR TQKDDGGWGE SYLSCPKKIY IPSEGKRSNL VQTAWAIIGL IHAGQAERDP
701: IPLHRAAKLI INSQMENGDF PQQEIVGVFM RNCLIHYATY RNTFPLWALA EYRKATFPTH QQLLQ

Best Arabidopsis Sequence Match ( AT1G78960.2 )
(BLAST)

001: MWKLKIGEGN GEDPYLFSSN NFVGRQTWEF DPKAGTPEER AAVEDARRNY LDNRPRVKGC SDLLWRMQFL KEAKFEQVIP PVKIDDGEGI TYKNATDALR
101: RAVSFYSALQ SSDGHWPAEI TGTLFFLPPL VFCFYITGHL EKIFDAEHRK EMLRHIYCHQ NEDGGWGLHI EGKSVMFCTV LNYICLRMLG EGPNGGRNNA
201: CKRARQWILD HGGVTYIPSW GKIWLSILGI YDWSGTNPMP PEIWLLPSFF PIHLGKTLCY TRMVYMPMSY LYGKRFVGPL TPLIMLLRKE LHLQPYEEIN
301: WNKARRLCAK EDMIYPHPLV QDLLWDTLHN FVEPILTNWP LKKLVREKAL RVAMEHIHYE DENSHYITIG CVEKVLCMLA CWIENPNGDH FKKHLARIPD
401: FMWVAEDGLK MQSFGSQLWD TVFAIQALLA CDLSDETDDV LRKGHSFIKK SQVRENPSGD FKSMYRHISK GAWTLSDRDH GWQVSDCTAE ALKCCMLLSM
501: MPAEVVGQKI DPEQLYDSVN LLLSLQGEKG GLTAWEPVRA QEWLELLNPT DFFTCVMAER EYVECTSAVI QALVLFKQLY PDHRTKEIIK SIEKGVQFIE
601: SKQTPDGSWH GNWGICFIYA TWFALSGLAA AGKTYKSCLA VRKGVDFLLA IQEEDGGWGE SHLSCPEQRY IPLEGNRSNL VQTAWAMMGL IHAGQAERDP
701: TPLHRAAKLI ITSQLENGDF PQQEILGVFM NTCMLHYATY RNIFPLWALA EYRKAAFATH QDL

Arabidopsis Description

LUP2Amyrin synthase LUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.