CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77512	Canola	cytosol	96.73	95.11
CDX85103	Canola	cytosol	13.09	94.34
CDY50938	Canola	cytosol	87.04	87.16
AT2G07050.1	Thale cress	cytosol	86.13	86.69
CDX93093	Canola	cytosol	86.78	86.33
VIT_11s0065g00640.t01	Wine grape	cytosol	75.79	76.18
KRH74134	Soybean	endoplasmic reticulum	75.13	75.83
PGSC0003DMT400073861	Potato	mitochondrion	48.82	75.66
EES06259	Sorghum	cytosol	72.12	72.79
Os02t0139700-01	Rice	cytosol	71.86	72.33
Solyc04g050670.1.1	Tomato	cytosol	15.31	72.22
TraesCS6B01G139000.1	Wheat	golgi	71.34	71.71
Solyc04g070980.2.1	Tomato	plastid	71.2	71.58
TraesCS6A01G110800.1	Wheat	cytosol, golgi	71.07	71.45
Zm00001d015234_P002	Maize	cytosol	70.68	70.87
Zm00001d053889_P004	Maize	cytosol	69.9	70.26
EES06258	Sorghum	cytosol	69.37	69.65
Os02t0139500-02	Rice	cytosol	32.2	69.49
TraesCS6D01G099400.2	Wheat	cytosol	71.07	68.22
TraesCS2B01G407300.1	Wheat	cytosol	39.01	67.57
TraesCS6A01G110200.1	Wheat	mitochondrion	66.36	67.24
TraesCS2D01G387000.1	Wheat	cytosol, plastid	68.06	67.18
HORVU6Hr1G019840.10	Barley	mitochondrion	69.5	67.13
TraesCS6B01G138500.1	Wheat	cytosol	63.09	66.94
TraesCS6D01G098800.1	Wheat	mitochondrion	66.49	66.41
TraesCS5D01G011800.1	Wheat	mitochondrion	62.7	63.11
TraesCS5A01G004900.1	Wheat	mitochondrion	62.57	62.98
Zm00001d008674_P001	Maize	mitochondrion	42.67	62.93
TraesCS5D01G006600.1	Wheat	cytosol	62.57	62.89
Zm00001d008671_P001	Maize	cytosol	43.46	62.64
TraesCS5D01G006700.1	Wheat	cytosol	62.04	62.37
TraesCS6A01G110300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	61.78	62.35
TraesCS5A01G005900.1	Wheat	cytosol, golgi, mitochondrion, plastid	51.57	61.85
EES08419	Sorghum	cytosol, mitochondrion, plastid	15.97	61.31
KXG29303	Sorghum	cytosol	6.54	60.98
TraesCS6D01G098600.1	Wheat	cytosol	67.54	60.78
TraesCS2B01G407200.1	Wheat	cytosol	5.89	60.0
TraesCS5B01G004800.1	Wheat	cytosol	56.94	58.55
CDX87419	Canola	cytosol	56.94	56.86
GSMUA_Achr7P15800_001	Banana	cytosol, mitochondrion	13.09	56.5
CDY57947	Canola	cytosol	56.15	55.93
CDX79277	Canola	cytosol	50.26	55.9
CDY72111	Canola	cytosol	30.1	55.83
CDY40048	Canola	cytosol	5.89	55.56
CDX87420	Canola	cytosol	55.37	55.08
CDX88494	Canola	endoplasmic reticulum, plasma membrane	55.89	55.03
CDX88493	Canola	cytosol	55.76	54.76
CDY35103	Canola	mitochondrion	54.06	52.41
CDY49432	Canola	cytosol	45.94	48.28
CDY52589	Canola	cytosol	45.81	48.14
CDY20917	Canola	cytosol	25.39	47.32
CDY20916	Canola	cytosol	15.45	46.64
CDY38925	Canola	cytosol, nucleus, plasma membrane	44.9	46.6
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	30.76	46.53
CDY25386	Canola	cytosol, plasma membrane, plastid	35.08	45.73
CDY25392	Canola	cytosol	44.9	45.07
CDY29797	Canola	cytosol	44.9	45.07
CDY08878	Canola	cytosol	10.21	42.16
CDX89541	Canola	cytosol	7.2	37.41
CDY29789	Canola	cytosol	4.45	34.69
CDY34478	Canola	cytosol, extracellular	15.97	32.71
CDY63677	Canola	cytosol	3.27	26.32

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	MapMan:9.1.5.3	GO:A0A078DA20	EnsemblPlants:CDX85104	ProteinID:CDX85104
ProteinID:CDX85104.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866	EnsemblPlantsGene:GSBRNA2T00142585001	PFAM:PF13243
PFAM:PF13249	ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF27	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N
SUPFAM:SSF48239	InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0004EEFB86

Description

BnaC07g08020D

Coordinates

chrLK031840:-:478736..483278

Molecular Weight (calculated)

86227.1 Da

IEP (calculated)

5.908

GRAVY (calculated)

-0.178

Length

764 amino acids

Sequence
(BLAST)

001: MWKLKIGDGD SPWLRTTNNH VGRQTWEFNP LLGTPEELAA IEEARNSFTQ NRFSNKHSSD LLMRLQFSGE NLISSVLPQV KLEDIDDDVT DKIVENSLKR
101: GLDFFSTLQA HDGHWPGDYA GPMFLLPGLI ITLSITGALN TVLSEQHKHE IHIICPSTYC MFQNEDGGWG LHIEGHSTMF MSVLNYVTLR LLGQGPDAGD
201: GAMEKGRDWI LNHGGATHIT SWGKLWLSVL GAFEWSGNNP LPPEIWLLPY FLPIHPGRMW CHCRMVYLPM SYLYGKRFVG PITSTVLALR KELFSVPYED
301: IDWNQARTLC AKEDLYYPHP LVQDILWASL HKVVEPVLSR WPGTILREKA LRTTLEHIHY EDENTRYLCI GPVNKVLNML CCWVEDPNSE AFKLHLPRIH
401: DYLWLAEDGM KMQGYNGSQL WDAGFAVQAI LATNFVEEYG PVLKKAHSFV KNSQVLEDCP GDLSYWYRHI SKGAWPFSTA DHGWPISDCT AEGLKATLLL
501: SKVSKEIVGE PLDTNRLYDA VNVLISLQNA DGGVATYELT RSYPWLELIN PSETFGDIVI DYPYVECTSA AIQALVAFRK LYPGHRKKDV DECIEKAVKF
601: IESSQARDGS WYGSWAVCFT YGAWFGVKGL EAVGKTLKNS PAVAKACEFL LSKQLPSGGW GESYLSCQDK VYTGIKGNKS HVVNTSWALL ALIGAGQAEV
701: DQEPLHRAAR YLIIAQLEEG DFPQQEIMGV FNRNCMITYA AYRNIFPIWA LGEYRSKVIL QQVE

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.