Factsheet for TraesCS6B01G139000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

gfp, msms PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G110800.1	Wheat	cytosol, golgi	98.16	98.16
TraesCS6D01G099400.2	Wheat	cytosol	98.55	94.1
HORVU6Hr1G019840.10	Barley	mitochondrion	95.26	91.53
EES06259	Sorghum	cytosol	88.16	88.51
TraesCS2B01G407200.1	Wheat	cytosol	8.55	86.67
Os02t0139700-01	Rice	cytosol	86.18	86.3
Zm00001d015234_P002	Maize	cytosol	85.0	84.78
Zm00001d053889_P004	Maize	cytosol	84.61	84.61
EES06258	Sorghum	cytosol	84.47	84.36
TraesCS2B01G407300.1	Wheat	cytosol	47.24	81.41
GSMUA_Achr7P15790_001	Banana	cytosol	63.95	80.07
TraesCS6B01G138500.1	Wheat	cytosol	71.05	75.0
KRH74134	Soybean	endoplasmic reticulum	74.47	74.77
AT2G07050.1	Thale cress	cytosol	74.08	74.18
CDY50938	Canola	cytosol	73.95	73.66
PGSC0003DMT400073861	Potato	mitochondrion	47.63	73.43
VIT_11s0065g00640.t01	Wine grape	cytosol	73.29	73.29
Bra013167.1-P	Field mustard	cytosol	73.95	73.27
CDX93093	Canola	cytosol	73.95	73.18
VIT_09s0018g00630.t01	Wine grape	cytosol	71.84	72.03
VIT_09s0054g01550.t01	Wine grape	cytosol	71.71	71.9
VIT_09s0054g01180.t01	Wine grape	cytosol	60.53	71.54
CDX85104	Canola	cytosol	71.71	71.34
Solyc04g070980.2.1	Tomato	plastid	71.32	71.32
CDX77512	Canola	cytosol	72.76	71.17
VIT_09s0054g01120.t01	Wine grape	cytosol	66.45	70.93
VIT_09s0054g01250.t01	Wine grape	cytosol	27.5	70.37
VIT_09s0054g01110.t01	Wine grape	cytosol	72.24	68.97
Solyc04g050670.1.1	Tomato	cytosol	14.21	66.67
TraesCS5B01G004800.1	Wheat	cytosol	63.95	65.41
TraesCS5B01G545900.1	Wheat	cytosol	61.97	64.43
Bra014952.1-P	Field mustard	cytosol	70.13	63.15
TraesCS7B01G131400.1	Wheat	mitochondrion	59.61	60.32
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	5.26	58.82
VIT_09s0054g01090.t01	Wine grape	cytosol	72.63	58.17
TraesCS6B01G139500.1	Wheat	mitochondrion	56.71	56.12
TraesCS2B01G049300.2	Wheat	mitochondrion	55.0	55.36
TraesCS4B01G390800.1	Wheat	mitochondrion	53.82	54.32
VIT_04s0008g03000.t01	Wine grape	cytosol	21.84	54.07
TraesCS4B01G390900.1	Wheat	extracellular, plasma membrane	46.05	53.68
PGSC0003DMT400048787	Potato	cytosol	3.95	51.72
VIT_04s0008g02990.t01	Wine grape	cytosol	5.92	47.87
VIT_04s0008g02980.t01	Wine grape	mitochondrion	9.74	47.44
PGSC0003DMT400062376	Potato	extracellular, vacuole	11.32	44.56
PGSC0003DMT400077891	Potato	extracellular, golgi, mitochondrion, plastid	21.18	37.44
CDY29789	Canola	cytosol	3.82	29.59

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	MapMan:9.1.5.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866
PFAM:PF13243	PFAM:PF13249	ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF27	InterPro:SQ_cyclase_C
InterPro:SQ_cyclase_N	SUPFAM:SSF48239	InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase
EnsemblPlantsGene:TraesCS6B01G139000	EnsemblPlants:TraesCS6B01G139000.1	TIGR:cd02892	SEG:seg	:	:

Description

No Description!

Coordinates

chr6B:-:136114879..136128498

Molecular Weight (calculated)

86014.8 Da

IEP (calculated)

6.187

GRAVY (calculated)

-0.260

Length

760 amino acids

Sequence
(BLAST)

001: MWRLKIAEGG ADPWLPTKNA HVGRQVWEFD AAADDPDALA AVDAARREFT ARRHQLKHSA DLPMRIQLAK ENPLKLDLPA IKLGENEDVT EEAVSTTLKR
101: ALSTFSTLQA HDGHWPGDYG GPMFLMPGLL IMLHVTGALN TVLSSEHQKE IRRYLYNHQN EDGGWGLHIE GPSTMFGSAL TYVSLRLLGE GPDSGDGAME
201: KGRNWILDHG GATYITSWGK FWLAVLGVFD WSGNNPLPPE IWMLPYCLPV HPGRMWCHCR MVYLPMCYVY GKRFVGQITP IILELRNELF KVPYSEVDWD
301: SARNLCAKED LYYPHPLIQD ILWATLHKFV EPVMMHWPGN KLREKSLNHV MQHVHYEDEN TRYICIGPVN KVLNMLACWI EDPNSEAFKL HIPRIYDYLW
401: VAEDGMKMQG YNGSQLWDTA FAVQAIAATD LIEEFAPTLK LAHDYIKNSQ VVDDCPGDLS YWYRHISKGA WPFSTADHGW PISDCTAEGL KASLLLSKIS
501: PEIVGEPVEV NRLYDAVNCL MSWMNENGGL ATYELQRSYA WLELINPAET FGDIVIDYPY VECTSAAIQA LTSFKKLYPG HRRKDVDNCI NKAACYIESI
601: QRKDGSWYGS WAVCFTYGTW FGVKGLIAAG RTFKSSPAIR KACDFLMSKE LPFGGWGESY LSSQDQVYTN LEGKHTHAVN TGWAMLTLID AGQAERDPTP
701: LHRAAKVLIN LQSEDGEFPQ QEIMGVFNKN CMISYSQYRN IFPIWALGEY RCRVLGAGKK

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.