Factsheet for TraesCS5B01G004800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G006700.1	Wheat	cytosol	89.23	87.24
TraesCS5A01G005900.1	Wheat	cytosol, golgi, mitochondrion, plastid	72.68	84.77
TraesCS2B01G407300.1	Wheat	cytosol	38.49	64.85
TraesCS6B01G139000.1	Wheat	golgi	65.41	63.95
TraesCS2B01G407200.1	Wheat	cytosol	6.33	62.67
GSMUA_Achr7P15790_001	Banana	cytosol	50.34	61.61
TraesCS6B01G138500.1	Wheat	cytosol	59.35	61.25
VIT_09s0054g01250.t01	Wine grape	cytosol	24.09	60.27
KRH74134	Soybean	endoplasmic reticulum	60.83	59.71
CDY50938	Canola	cytosol	60.57	58.98
AT2G07050.1	Thale cress	cytosol	60.16	58.89
Bra013167.1-P	Field mustard	cytosol	60.7	58.8
CDX93093	Canola	cytosol	60.7	58.72
VIT_11s0065g00640.t01	Wine grape	cytosol	59.62	58.29
PGSC0003DMT400073861	Potato	mitochondrion	38.63	58.22
VIT_09s0054g01180.t01	Wine grape	cytosol	50.07	57.85
VIT_09s0054g01550.t01	Wine grape	cytosol	58.95	57.78
CDX77512	Canola	cytosol	59.89	57.27
CDX85104	Canola	cytosol	58.55	56.94
Solyc04g070980.2.1	Tomato	plastid	58.14	56.84
VIT_09s0054g01120.t01	Wine grape	cytosol	54.24	56.6
VIT_09s0018g00630.t01	Wine grape	cytosol	57.74	56.6
VIT_09s0054g01110.t01	Wine grape	cytosol	58.95	55.03
TraesCS5B01G545900.1	Wheat	cytosol	53.57	54.45
TraesCS7B01G131400.1	Wheat	mitochondrion	54.24	53.66
TraesCS2B01G049300.2	Wheat	mitochondrion	52.22	51.39
Bra014952.1-P	Field mustard	cytosol	57.87	50.95
TraesCS6B01G139500.1	Wheat	mitochondrion	52.62	50.91
Solyc04g050670.1.1	Tomato	cytosol	11.04	50.62
VIT_04s0008g03000.t01	Wine grape	cytosol	20.73	50.16
TraesCS4B01G390800.1	Wheat	mitochondrion	50.2	49.54
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	4.44	48.53
TraesCS4B01G390900.1	Wheat	extracellular, plasma membrane	42.53	48.47
VIT_09s0054g01090.t01	Wine grape	cytosol	58.82	46.05
PGSC0003DMT400062376	Potato	extracellular, vacuole	11.57	44.56
PGSC0003DMT400048787	Potato	cytosol	3.1	39.66
VIT_04s0008g02990.t01	Wine grape	cytosol	4.98	39.36
VIT_04s0008g02980.t01	Wine grape	mitochondrion	7.94	37.82
PGSC0003DMT400077891	Potato	extracellular, golgi, mitochondrion, plastid	18.71	32.33
CDY29789	Canola	cytosol	3.36	25.51

Protein Annotations

EnsemblPlants:TraesCS5B01G004800.1	EnsemblPlantsGene:TraesCS5B01G004800	Gene3D:1.50.10.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866
InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	InterPro:Squalene_cyclase	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764
PANTHER:PTHR11764:SF36	PFAM:PF13243	PFAM:PF13249	ScanProsite:PS01074	SEG:seg	SUPFAM:SSF48239
TIGR:cd02892	TIGRFAMs:TIGR01787	MapMan:9.1.4.3	:	:	:

Description

No Description!

Coordinates

chr5B:+:6570469..6587252

Molecular Weight (calculated)

84664.5 Da

IEP (calculated)

6.723

GRAVY (calculated)

-0.226

Length

743 amino acids

Sequence
(BLAST)

001: MWRLKIGEGD GNPLLRTTSG HVGREVWKFD PAADDPEEVA AVEAARRDFT SRRYQMKNSS DLLMRMQLSK SNGLKTNLPD PIKLEQHGYA TQEAVLISLK
101: RAISRYSTLQ ADDGHCWHFI SLAQLALYVT GSLTTVLTSE HQKEIRRYLY NHQAVQNEDG GWGLHIEGTS TMFCSDMNYV ALRLLGEGLD SHGPMLQARS
201: WILDHGGATL TPSWGKFFLS VLGVYDWSGN NPLPPELWMV PYFLPIHPGR MWCHSRLVYL PMSYLYGKRF VGTTTSIVLD LRKELYNVPY DEINWDKACN
301: GCAKEDLYYS HSALKDIVSA TLKKVGEPIF MHWPGSNLRE KALDNVMKHI KYEDETTQYI CIGPLNKMLN MICCWVEDPN SEAFKLHIER IYDFLWVAKD
401: GMKLKSYNGS QLWDTVLTVQ AIFATGLTKE FPHAIKLAHD YIKSSQIHVN FPGDQIEWYH HITKGGWTHS TADHGWPVSD CTAEALKVIL MLIKLPPELV
501: GEPMERSKLD DANDDGSFGA YELTRSYEWL EVIISVANFV LILMHFQSLV AHRYVECTSS VIQGLVLFRE MYPKHCRMEE IENCIQKAVD YIESIQRSDG
601: SWYGCWAICF TYGTWFSVRG LIAAGRTYKN SQAIRKACEF LLSKELLPLG GVYTNLEGNR PHAVNTSWAM LALIDAGQGQ RNPAPLHRAA TVLINFQSED
701: GEFPQQDIIG VANRNLMLTY AQYRNIFPVW ALGDYYRRIV LTT

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.