Factsheet for Solyc04g070980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073861	Potato	mitochondrion	52.63	81.14
AT2G07050.1	Thale cress	cytosol	75.66	75.76
CDY50938	Canola	cytosol	75.53	75.23
Bra013167.1-P	Field mustard	cytosol	75.26	74.58
CDX93093	Canola	cytosol	75.26	74.48
Os02t0139700-01	Rice	cytosol	71.45	71.54
EES06259	Sorghum	cytosol	71.18	71.47
TraesCS6B01G139000.1	Wheat	golgi	71.32	71.32
CDX77512	Canola	cytosol	72.89	71.3
CDX85104	Canola	cytosol	71.58	71.2
TraesCS6A01G110800.1	Wheat	cytosol, golgi	71.18	71.18
Solyc04g050670.1.1	Tomato	cytosol	15.13	70.99
Zm00001d015234_P002	Maize	cytosol	68.95	68.77
Zm00001d053889_P004	Maize	cytosol	68.55	68.55
TraesCS6D01G099400.2	Wheat	cytosol	71.71	68.47
EES06258	Sorghum	cytosol	68.55	68.46
KXG29303	Sorghum	cytosol	7.37	68.29
TraesCS2B01G407200.1	Wheat	cytosol	6.58	66.67
HORVU6Hr1G019840.10	Barley	mitochondrion	69.08	66.37
TraesCS2B01G407300.1	Wheat	cytosol	38.29	65.99
TraesCS2D01G387000.1	Wheat	cytosol, plastid	67.11	65.89
TraesCS6A01G110200.1	Wheat	mitochondrion	63.95	64.46
TraesCS6B01G138500.1	Wheat	cytosol	60.92	64.31
TraesCS6D01G098800.1	Wheat	mitochondrion	64.21	63.79
Os02t0139500-02	Rice	cytosol	29.47	63.28
Solyc05g047580.2.1	Tomato	cytosol	60.53	62.93
Bra014952.1-P	Field mustard	cytosol	69.87	62.91
TraesCS5D01G011800.1	Wheat	mitochondrion	61.32	61.4
TraesCS5A01G004900.1	Wheat	mitochondrion	61.05	61.13
TraesCS5A01G005900.1	Wheat	cytosol, golgi, mitochondrion, plastid	50.92	60.75
TraesCS5D01G006600.1	Wheat	cytosol	60.53	60.53
TraesCS5D01G006700.1	Wheat	cytosol	60.53	60.53
TraesCS6A01G110300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	59.21	59.45
Zm00001d008671_P001	Maize	cytosol	41.32	59.25
EES08419	Sorghum	cytosol, mitochondrion, plastid	15.39	58.79
TraesCS5B01G004800.1	Wheat	cytosol	56.84	58.14
Zm00001d008674_P001	Maize	mitochondrion	39.61	58.11
TraesCS6D01G098600.1	Wheat	cytosol	64.61	57.83
GSMUA_Achr7P15800_001	Banana	cytosol, mitochondrion	13.16	56.5
Solyc12g006530.1.1	Tomato	cytosol	55.79	55.72
Solyc12g006520.1.1	Tomato	cytosol	49.21	53.58
Solyc07g042630.2.1	Tomato	cytosol	52.76	53.04
Solyc12g006510.1.1	Tomato	cytosol	52.24	52.65
Solyc12g035460.1.1	Tomato	cytosol	13.82	46.67
Solyc12g035450.1.1	Tomato	cytosol, plasma membrane, plastid	10.53	46.51
Solyc12g035440.1.1	Tomato	cytosol	4.87	42.53

Protein Annotations

EnsemblPlants:Solyc04g070980.2.1	EnsemblPlantsGene:Solyc04g070980.2	Gene3D:1.50.10.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0016853
GO:GO:0016866	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	InterPro:Squalene_cyclase	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase
PANTHER:PTHR11764	PANTHER:PTHR11764:SF27	PFAM:PF13243	PFAM:PF13249	ScanProsite:PS01074	SUPFAM:SSF48239
TIGRFAMs:TIGR01787	UniParc:UPI000276664E	UniProt:K4BT90	MapMan:9.1.4.3	MapMan:9.1.5.3	:

Description

Terpene cyclase/mutase family member [Source:UniProtKB/TrEMBL;Acc:K4BT90]

Coordinates

chr4:+:57824489..57840444

Molecular Weight (calculated)

86194.9 Da

IEP (calculated)

6.924

GRAVY (calculated)

-0.256

Length

760 amino acids

Sequence
(BLAST)

001: MWKLKVAEGG SPWLRTTNNH VGREVWEFEA DFGSPEDRAQ IEKFREHFTK HRLEQKHSAD LLMRYQLSKE NQGISILPQV KINDNEVITE DNVATTLRRA
101: LSFYSTLQNN DGHWAGDYGG PMFLMPGMII ALSITGALNA VFSSEHKREM IRYLYNHQNS DGGWGLHIES HSTMFGSALS YVTLRLLGEG ANDGDGAMEK
201: GRKWILDHGS ATAITSWGKM WLSVQCLEYL TGLGTTHFLL KYGFFPISFP SILVRRMWCH CRMVYLPMCY LYGKRFVGPI TPTVLSLRKE LFTVPYHEVD
301: WDKARNECAK EDLYYPHPLV QDIMWATLHK VVEPILMHWP GKRLREKALR TVMEHIHYED ENTRYICIGP VNKIINMLCC WVEDPNSEAF KLHLPRIHDY
401: MWVAEDGMKM KGYNGSQCWD TSFAVQAIIA TGFGEEYGST LRKAHSFLTN TQVLDNCPGD LDFWYRHISK GAWPFSTADH GWPISDCTAE GLKAVLLLSK
501: LPSEMVGNPL EAKRLYDAVN VLLSLQNSGG GFATYELSRS YPWLELINPA ETFGDIVIDY PYVECSSAAI QALTAFKKLY PGHRKEEVER CIAKAAAFIE
601: SIQETDGSWY GSWAVCFTYG TWFGVLGLLA AGRNYNNSSS IRKACTFLLS KQVSSGGWGE SYLSCQNKVY TNLEGNRSHV VNTAWAMLAL IAAGQAERNP
701: TPLHSAAKEL INAQQENGDY PQQEIMGVFN RNCMISYSAY RNIFPIWALG EYRAHVLKAN

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.