Factsheet for Solyc12g006510.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
golgi 1
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051584	Potato	cytosol	89.39	88.57
PGSC0003DMT400043981	Potato	cytosol	70.16	86.72
Solyc12g006530.1.1	Tomato	cytosol	86.6	85.81
Solyc12g006520.1.1	Tomato	cytosol	78.12	84.38
Solyc12g035440.1.1	Tomato	cytosol	8.62	74.71
KRH46975	Soybean	endoplasmic reticulum	73.21	72.44
KRH44692	Soybean	endoplasmic reticulum	72.94	72.18
KRH66671	Soybean	cytosol	71.35	70.6
Solyc12g035460.1.1	Tomato	cytosol	20.95	70.22
KRH66676	Soybean	cytosol	57.56	68.89
Solyc12g035450.1.1	Tomato	cytosol, plasma membrane, plastid	15.25	66.86
KRH10719	Soybean	cytosol	40.05	66.23
KRH11342	Soybean	cytosol	59.95	64.94
KRH66677	Soybean	cytosol	10.74	59.56
Solyc07g042630.2.1	Tomato	cytosol	58.09	57.94
Solyc05g047580.2.1	Tomato	cytosol	50.66	52.26
Solyc04g070980.2.1	Tomato	plastid	52.65	52.24
TraesCS4A01G495100.1	Wheat	cytosol	51.86	51.65
TraesCS7A01G003500.1	Wheat	cytosol	50.53	50.2
TraesCS7D01G004000.1	Wheat	cytosol	50.53	50.2
EES13537	Sorghum	cytosol	50.13	49.61
HORVU7Hr1G000400.1	Barley	cytosol, plastid	47.88	48.98
Os08t0223900-00	Rice	cytosol	50.8	48.79
Solyc04g050670.1.1	Tomato	cytosol	10.48	48.77
Zm00001d024337_P001	Maize	cytosol	45.62	47.58

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0016853
GO:GO:0016866	UniProt:K4DBI8	PFAM:PF13243	PFAM:PF13249	ScanProsite:PS01074	PANTHER:PTHR11764
PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	SUPFAM:SSF48239	EnsemblPlantsGene:Solyc12g006510.1	EnsemblPlants:Solyc12g006510.1.1
InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI000276A7CA	:

Description

Terpene cyclase/mutase family member [Source:UniProtKB/TrEMBL;Acc:K4DBI8]

Coordinates

chr12:+:1016976..1023578

Molecular Weight (calculated)

86814.5 Da

IEP (calculated)

6.886

GRAVY (calculated)

-0.375

Length

754 amino acids

Sequence
(BLAST)

001: MWKLKIAKGQ DDRYLYSTNN YIGRQIWEFD PNAGTIEEQA KIEEARQHYW NNRYKVKPNS DLLWRMQFLR EKNFKQRIGA VKVEEGEEIS HEIATIALRR
101: AVHFFSALQA TDGHWPAENA GLLFFLPPLV MCMYITGHLN TVFPAEHRKE ILRYIYCHQN EDGGWGLHIE GHSTMFCTAL SYICMRILGE GPDGGERNAC
201: ARARKWILDH GSVTAIPSSG KIWLSILGAF EWLGTNPIPP EFYILPSFLP MHPGSRIFYM PLSYLYGKRF VGPITPLILQ LREELYDQPY NEINWKRVRH
301: LCAKEDLYYP HPLVQDLMWD TLYFFYEPLL TRWPFNKLRN KALEVTMKHL HYEDENSRYI TVQCVNKVLC MLACWVEDPN GSYFKKHLAR VPDYLWVAED
401: GMKMQNSGSQ SWDTSFAIQA LLASEMNDEI SDTLRKGHDF IKKSQVKDNP SGDFRGMYRH ISKGSWTFSD QDYGWQSSDT TAEALRCCLF FSTMPSKLVG
501: EAMEPARLYD SVNVILSLQS KNGGLAAWEP AGTSKYLELL NPTEIFEDVV IEYVECTGSS IQALVHFKKL YPGHRTTEID NFIDNAVKYI ENVQRPDGSW
601: YGFWGVCFTY ASWFALGGLA AAGKSYSNSA AVRKGVDFLL QRQRSDGGWG ESYHSCPDKV YRELETEHSN LVQTAWALMG LIHSGQADRD PKPLHRAARL
701: LINSQMEDGD FPQQEITGAF MKNCMLHYAT FRNIFPLWGL AEYRKNVSVS LKNS

Best Arabidopsis Sequence Match ( AT1G78950.2 )
(BLAST)

001: MRYVAHIFVM WRLKIGEGNG DDPYLFTTNN FAGRQTWEFD PDGGSPEERH SVVEARRIFY DNRFHVKASS DLLWRMQFLR EKKFEQRIAP VKVEDSEKVT
101: FETATSALRR GIHFFSALQA SDGHWPAENA GPLFFLPPLV FCLYITGHLD EVFTSEHRKE ILRYIYCHQK EDGGWGLHIE GHSTMFCTTL NYICMRILGE
201: SPDGGHDNAC GRAREWILSH GGVTYIPSWG KTWLSILGVF DWSGSNPMPP EFWILPSFFP VHPAKMWSYC RMVYLPMSYL YGKRFVGPIT SLILQLRKEL
301: YLQPYEEINW MKVRHLCAKE DTYYPRPLVQ ELVWDSLYIF AEPFLARWPF NKLLREKALQ LAMKHIHYED ENSRYITIGC VEKVLCMLAC WVEDPNGDYF
401: KKHLSRISDY LWMAEDGMKM QSFGSQLWDT GFAMQALLAS NLSSEISDVL RRGHEFIKNS QVGENPSGDY KSMYRHISKG AWTFSDRDHG WQVSDCTAHG
501: LKCCLLFSML APDIVGPKQD PERLHDSVNI LLSLQSKNGG MTAWEPAGAP KWLELLNPTE MFSDIVIEHE YSECTSSAIQ ALSLFKQLYP DHRTTEITAF
601: IKKAAEYLEN MQTRDGSWYG NWGICFTYGT WFALAGLAAA GKTFNDCEAI RKGVQFLLAA QKDNGGWGES YLSCSKKIYI AQVGEISNVV QTAWALMGLI
701: HSGQAERDPI PLHRAAKLII NSQLESGDFP QQQATGVFLK NCTLHYAAYR NIHPLWALAE YRARVSLP

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.