CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plasma membrane
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46975	Soybean	endoplasmic reticulum	95.93	95.93
KRH66671	Soybean	cytosol	88.58	88.58
KRH66676	Soybean	cytosol	70.73	85.56
KRH66677	Soybean	cytosol	14.44	80.88
CDY40048	Canola	cytosol	8.53	80.25
Solyc12g006530.1.1	Tomato	cytosol	78.74	78.84
PGSC0003DMT400048796	Potato	cytosol	78.74	78.84
KRH10719	Soybean	cytosol	46.98	78.51
KRH11342	Soybean	cytosol	69.55	76.15
Solyc12g006520.1.1	Tomato	cytosol	69.55	75.93
PGSC0003DMT400043981	Potato	cytosol	60.5	75.57
PGSC0003DMT400048795	Potato	cytosol	72.57	75.44
PGSC0003DMT400051584	Potato	cytosol	74.8	74.9
Solyc12g006510.1.1	Tomato	cytosol	72.18	72.94
VIT_09s0054g01420.t01	Wine grape	cytosol, extracellular, golgi	9.45	66.06
KRH38081	Soybean	cytosol	6.04	62.16
KRG92127	Soybean	cytosol	61.55	61.23
KRH41389	Soybean	cytosol	59.71	59.63
KRH74134	Soybean	endoplasmic reticulum	59.19	59.58
CDY49432	Canola	cytosol	56.69	59.42
CDY52589	Canola	cytosol	56.56	59.28
Bra039929.1-P	Field mustard	cytosol	56.04	58.73
AT1G78500.2	Thale cress	cytosol	59.06	58.67
AT5G36150.1	Thale cress	cytosol	56.69	56.84
AT4G15340.1	Thale cress	mitochondrion	56.96	56.66
CDY38925	Canola	cytosol, nucleus, plasma membrane	54.72	56.66
AT4G15370.1	Thale cress	cytosol	56.43	56.65
Bra032185.1-P	Field mustard	cytosol, plasma membrane, plastid	56.04	56.18
AT5G48010.2	Thale cress	cytosol	56.43	56.14
CDY29797	Canola	cytosol	55.64	55.72
Bra035809.1-P	Field mustard	cytosol	42.65	55.56
CDY25392	Canola	cytosol	55.12	55.19
CDY25386	Canola	cytosol, plasma membrane, plastid	42.39	55.12
KRH74136	Soybean	cytosol	55.25	54.89
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	36.35	54.85
AT5G42600.1	Thale cress	cytosol	54.59	54.66
TraesCS4A01G495100.1	Wheat	cytosol	53.81	54.16
Solyc12g035440.1.1	Tomato	cytosol	6.17	54.02
AT3G29255.1	Thale cress	cytosol	49.48	53.4
KRH13217	Soybean	cytosol	43.57	53.21
TraesCS7D01G004000.1	Wheat	cytosol	52.89	53.1
TraesCS7A01G003500.1	Wheat	cytosol	52.62	52.83
EES13537	Sorghum	cytosol	51.44	51.44
HORVU7Hr1G000400.1	Barley	cytosol, plastid	49.74	51.42
Os08t0223900-00	Rice	cytosol	52.36	50.83
Zm00001d024337_P001	Maize	cytosol	47.9	50.48
CDY08878	Canola	cytosol	12.2	50.27
Bra035810.1-P	Field mustard	cytosol, mitochondrion	9.19	50.0
CDX89541	Canola	cytosol	8.79	45.58
CDY63677	Canola	cytosol	4.72	37.89

Protein Annotations

Gene3D:1.50.10.20	EntrezGene:100778398	MapMan:9.1.4.3	UniProt:A0A0R0IYV7	EMBL:ACUP02004947	EnsemblPlantsGene:GLYMA_08G225800
GO:GO:0003674	GO:GO:0003824	GO:GO:0016853	GO:GO:0016866	EnsemblPlants:KRH44692	ProteinID:KRH44692
ProteinID:KRH44692.1	PFAM:PF13243	PFAM:PF13249	ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16
InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	SUPFAM:SSF48239	InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS
InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0002339281	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:18290000..18299620

Molecular Weight (calculated)

87641.1 Da

IEP (calculated)

6.744

GRAVY (calculated)

-0.291

Length

762 amino acids

Sequence
(BLAST)

001: MWRLKIAEGG NEAYIFSTNN FVGRQTWEFD PEAGTPEERA QVEAARKDFY HHRFKVKPCA DLLWRFQILR ENNFKQTIPS VKIEDGEEIT YQKVTSTVRR
101: GAHHLAALQT SDGHWPAQIA GPLFFLPPLV FCMYITGHLE SVFPEEHRKE ILRYIYYHQN EDGGWGLHIE GHSTMFCTAL NYICMRILGE GPNGGHYNAC
201: ARARNWIRDH GGVTHIPSWG KTWLSILGVF DWCGSNPMPP EFWILPSFLP MHPAKMWCYC RLVYMPMSYL YGKRFVGPIT PLILQLREEL FTQPYEKVNW
301: KKARHQYAKE DLYYPHPLVQ DLIWDSLYIF TEPLLTRWPF NKLIREKALQ VTMKHIHYED ETSRYITIGC VEKVLCMLAC WVEDPNGDAF KKHLARIPDY
401: LWVSEDGMTM QSFGSQEWDA GFAVQAFLAT NLIEEIGPTL AKGHDFIKKS QVKDNPLGDF KSMYRHISKG SWTFSDQDHG WQVSDCTAES LKCCLLLSML
501: PPEIVGEKME PERLYDSVNV LLSLQSKKGG LAAWELAGAQ EWLELLNPTE FFADIVVEHE YVECTGSAIQ ALVLFKNLYP GHRKKEIENF IANAVRFLED
601: TQTADGSWYG NWGVCFTYGS WFALGGLAAA GKTYINCAAI RKAVKFLLST QREDGGWGES YLSSPKKIYV PLEGSRSNVV HTAWALMGLI HAGQADRDPK
701: PLHRAAKLLI NSQLEEGDWP QQEITGVFMK NCMLHYPMYR DIYPMWALAE YRRRVPLPST EV

Best Arabidopsis Sequence Match ( AT1G78950.2 )
(BLAST)

001: MRYVAHIFVM WRLKIGEGNG DDPYLFTTNN FAGRQTWEFD PDGGSPEERH SVVEARRIFY DNRFHVKASS DLLWRMQFLR EKKFEQRIAP VKVEDSEKVT
101: FETATSALRR GIHFFSALQA SDGHWPAENA GPLFFLPPLV FCLYITGHLD EVFTSEHRKE ILRYIYCHQK EDGGWGLHIE GHSTMFCTTL NYICMRILGE
201: SPDGGHDNAC GRAREWILSH GGVTYIPSWG KTWLSILGVF DWSGSNPMPP EFWILPSFFP VHPAKMWSYC RMVYLPMSYL YGKRFVGPIT SLILQLRKEL
301: YLQPYEEINW MKVRHLCAKE DTYYPRPLVQ ELVWDSLYIF AEPFLARWPF NKLLREKALQ LAMKHIHYED ENSRYITIGC VEKVLCMLAC WVEDPNGDYF
401: KKHLSRISDY LWMAEDGMKM QSFGSQLWDT GFAMQALLAS NLSSEISDVL RRGHEFIKNS QVGENPSGDY KSMYRHISKG AWTFSDRDHG WQVSDCTAHG
501: LKCCLLFSML APDIVGPKQD PERLHDSVNI LLSLQSKNGG MTAWEPAGAP KWLELLNPTE MFSDIVIEHE YSECTSSAIQ ALSLFKQLYP DHRTTEITAF
601: IKKAAEYLEN MQTRDGSWYG NWGICFTYGT WFALAGLAAA GKTFNDCEAI RKGVQFLLAA QKDNGGWGES YLSCSKKIYI AQVGEISNVV QTAWALMGLI
701: HSGQAERDPI PLHRAAKLII NSQLESGDFP QQQATGVFLK NCTLHYAAYR NIHPLWALAE YRARVSLP

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol,plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.