CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:

plastid 3
cytosol 1
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, plasma membrane, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29797	Canola	cytosol	97.1	74.77
CDY25392	Canola	cytosol	97.1	74.77
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	61.6	71.49
CDY52589	Canola	cytosol	72.18	58.18
CDY49432	Canola	cytosol	72.01	58.05
AT4G15370.1	Thale cress	cytosol	72.35	55.86
AT4G15340.1	Thale cress	mitochondrion	72.35	55.35
CDY38925	Canola	cytosol, nucleus, plasma membrane	68.09	54.21
CDY72111	Canola	cytosol	37.71	53.64
AT5G48010.2	Thale cress	cytosol	68.43	52.35
KRH10719	Soybean	cytosol	40.44	51.97
KRH66676	Soybean	cytosol	54.44	50.63
KRH11342	Soybean	cytosol	53.24	44.83
CDX79277	Canola	cytosol	52.22	44.54
KRH46975	Soybean	endoplasmic reticulum	55.46	42.65
VIT_09s0054g01210.t01	Wine grape	cytosol	54.78	42.4
KRH44692	Soybean	endoplasmic reticulum	55.12	42.39
KRH66671	Soybean	cytosol	54.78	42.13
CDX87420	Canola	cytosol	54.95	41.93
CDX85103	Canola	cytosol	7.51	41.51
CDY20917	Canola	cytosol	29.01	41.46
CDX88493	Canola	cytosol	54.95	41.39
CDX87419	Canola	cytosol	53.24	40.78
CDX88494	Canola	endoplasmic reticulum, plasma membrane	53.24	40.21
CDY57947	Canola	cytosol	52.56	40.16
CDY35103	Canola	mitochondrion	53.41	39.72
CDY40048	Canola	cytosol	5.46	39.51
HORVU7Hr1G000400.1	Barley	cytosol, plastid	45.56	36.23
CDY50938	Canola	cytosol	46.42	35.65
CDX93093	Canola	cytosol	46.25	35.29
CDY08878	Canola	cytosol	11.09	35.14
CDX85104	Canola	cytosol	45.73	35.08
TraesCS7D01G004000.1	Wheat	cytosol	45.39	35.05
EES13537	Sorghum	cytosol	45.56	35.04
TraesCS7A01G003500.1	Wheat	cytosol	45.22	34.91
CDX77512	Canola	cytosol	46.08	34.75
TraesCS4A01G495100.1	Wheat	cytosol	44.88	34.74
Os08t0223900-00	Rice	cytosol	45.56	34.01
CDY63677	Canola	cytosol	5.46	33.68
Zm00001d024337_P001	Maize	cytosol	41.3	33.47
CDY34478	Canola	cytosol, extracellular	20.48	32.17
CDY20916	Canola	cytosol	9.73	22.53
CDX89541	Canola	cytosol	2.39	9.52
CDY29789	Canola	cytosol	1.02	6.12
KRH66677	Soybean	cytosol	0.34	1.47

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	GO:A0A078GJ23	UniProt:A0A078GJ23	EnsemblPlants:CDY25386	ProteinID:CDY25386
ProteinID:CDY25386.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866	EnsemblPlantsGene:GSBRNA2T00029516001	PFAM:PF13243
PFAM:PF13249	ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N
SUPFAM:SSF48239	InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0004EDC89E

Description

BnaA05g18980DBnaA05g18980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GJ23]

Coordinates

chrLK032174:+:432770..437326

Molecular Weight (calculated)

67318.0 Da

IEP (calculated)

6.771

GRAVY (calculated)

-0.205

Length

586 amino acids

Sequence
(BLAST)

001: MLSTVLNYIC LRILGVEPEQ GSTCAMARKW ILDHGGATYT PLFGKVWLSV LGVYDWSGCK SIPPEFWMLP SFSPINGGTV WIYFRESFMA LSYLYGKKFV
101: ATPTPLILQL REELYLHPYA QIVWSQAQNL CAKEDKYNQQ SYLQDLFWKS VHMFSDNILN RWPFNKIIRQ RALQTTMKLI HYHDESTRYL TTGCVPKVLC
201: MLACWVEEPE GDYFKKHLAR LHDFVWIGDD GLKFQQICGS QIWDTSFSLQ VLLAADDDDE IIRSTLIKGY DFLKKSQVTE NPPGDHLKMF RHITKGGWNF
301: PDKDQGLPGS DCTAESLECC LMFETMPLEF IGEKMDVKRI YDAVDLILHF QSKNGGVTAW EPAPGKTWLE WFSPVEFMKD AVVEHEFVEC TGSALVAIAR
401: FVKQFPEYKK EQVKDFIKNG VKYLENLQMS DGSWYGSWGV CFIYGTFFAV RGLVAAGKTY NDCEAIRRSV RFLLETQNEE GGWGESYLSC SKRRYIPLSG
501: RNKTNLVNTG QALISLILGG QMERDPRPVN RAAKVLINSQ LDNGDYPQEE MSGVLSVNLK LHYPMYRNIF TLWALTYYTQ ALRALQ

Best Arabidopsis Sequence Match ( AT1G78500.1 )
(BLAST)

001: MWRLKIGAKG GDETHLFTTN NYTGRQTWEF DADACSPEEL AEVDEARQNF SINRSRFKIS ADLLWRMQFL REKKFEQKIP RVEIGDAENI TYKDAKTALR
101: RGILYFKALQ AEDGHWPAEN SGCLFFEAPF VICLYITGHL EKILTLEHRK ELLRYMYNHQ NEDGGWGIHV EGQSAMFCTV INYICLRILG VEADLDDIKG
201: SGCARARKWI LDHGGATYTP LIGKAWLSIL GVYDWSGCKP IPPEVWMLPT FSPFNGGTLW IYFRDIFMGV SYLYGKKFVA TPTPLILQLR EELYPQPYDK
301: ILWSQARNQC AKEDLYYPQS FLQEMFWKCV HILSENILNR WPCNKLIRQK ALRTTMELLH YQDEASRYFT GGCVPKPFHM LACWVEDPDG DYFKKHLARV
401: PDYIWIGEDG LKIQSFGSQL WDTAFSLQVM LAYQDVDDDD DEIRSTLIKG YSFLNKSQLT QNPPGDHRKM LKDIAKGGWT FSDQDQGWPV SDCTAESLEC
501: CLVFGSMPSE LIGEKMDVER LYDAVNLLLY FQSKNGGITV WEAARGRTWL EWLSPVEFME DTIVEHEYVE CTGSAIVALA RFLKEFPEHR REEVEKFIKN
601: AVKYIESFQM PDGSWYGNWG VCFMYGTFFA VRGLVAAGKT YQNCEPIRKA VQFILETQNV EGGWGESYLS CPNKKYTLLE GNRTNVVNTG QALMVLIMGG
701: QMERDPLPVH RAAKVLINSQ LDNGDFPQEE IMGVFKMNVM VHYATYRNIF TLWALTYYTK ALRVPLC

Arabidopsis Description

PEN6Seco-amyrin synthase [Source:UniProtKB/Swiss-Prot;Acc:Q9SYN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.