CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25386	Canola	cytosol, plasma membrane, plastid	74.77	97.1
CDY25392	Canola	cytosol	96.06	96.06
CDY29789	Canola	cytosol	11.43	88.78
AT4G15370.1	Thale cress	cytosol	73.19	73.39
CDY52589	Canola	cytosol	69.51	72.76
CDY49432	Canola	cytosol	69.38	72.63
AT4G15340.1	Thale cress	mitochondrion	72.14	71.67
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	47.44	71.49
CDY38925	Canola	cytosol, nucleus, plasma membrane	69.12	71.47
AT5G48010.2	Thale cress	cytosol	68.46	68.02
CDY40048	Canola	cytosol	6.18	58.02
KRH46975	Soybean	endoplasmic reticulum	56.37	56.3
KRH44692	Soybean	endoplasmic reticulum	55.72	55.64
CDX87420	Canola	cytosol	56.11	55.6
KRH66671	Soybean	cytosol	55.06	54.99
KRH66676	Soybean	cytosol	45.47	54.92
VIT_09s0054g01210.t01	Wine grape	cytosol	54.53	54.82
CDX88493	Canola	cytosol	55.85	54.63
KRH66677	Soybean	cytosol	9.72	54.41
CDX87419	Canola	cytosol	54.14	53.86
CDY57947	Canola	cytosol	53.75	53.32
KRH11342	Soybean	cytosol	48.62	53.16
CDX89541	Canola	cytosol	10.25	53.06
CDX88494	Canola	endoplasmic reticulum, plasma membrane	54.01	52.96
CDY72111	Canola	cytosol	28.65	52.91
KRH10719	Soybean	cytosol	31.67	52.85
CDY35103	Canola	mitochondrion	54.14	52.28
CDX79277	Canola	cytosol	46.91	51.97
CDY20916	Canola	cytosol	15.9	47.83
CDY50938	Canola	cytosol	45.73	45.61
CDX93093	Canola	cytosol	45.34	44.92
CDX77512	Canola	cytosol	45.86	44.92
CDX85104	Canola	cytosol	45.07	44.9
TraesCS4A01G495100.1	Wheat	cytosol	43.89	44.12
TraesCS7A01G003500.1	Wheat	cytosol	43.89	44.01
EES13537	Sorghum	cytosol	44.02	43.96
TraesCS7D01G004000.1	Wheat	cytosol	43.76	43.87
CDX85103	Canola	cytosol	6.04	43.4
Zm00001d024337_P001	Maize	cytosol	41.13	43.29
HORVU7Hr1G000400.1	Barley	cytosol, plastid	41.39	42.74
CDY20917	Canola	cytosol	23.0	42.68
Os08t0223900-00	Rice	cytosol	43.76	42.42
CDY08878	Canola	cytosol	9.99	41.08
CDY63677	Canola	cytosol	4.2	33.68
CDY34478	Canola	cytosol, extracellular	15.77	32.17

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	GO:A0A078GX71	UniProt:A0A078GX71	EnsemblPlants:CDY29797	ProteinID:CDY29797
ProteinID:CDY29797.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0016853	GO:GO:0016866	EnsemblPlantsGene:GSBRNA2T00043686001
PFAM:PF13243	PFAM:PF13249	ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C
InterPro:SQ_cyclase_N	SUPFAM:SSF48239	InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI0004EEE014	:	:	:	:	:

Description

BnaC05g31930DTerpene cyclase/mutase family member [Source:UniProtKB/TrEMBL;Acc:A0A078GX71]

Coordinates

chrLK032244:+:230745..241184

Molecular Weight (calculated)

87794.3 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.286

Length

761 amino acids

Sequence
(BLAST)

001: MWRLRIGAAA KDDHHLFSTN NYVGRQTWEF DAEAGSPAEF AGMEQARRNF SLNRSRFKTS GDLLWRIQFL SEKKFEQKIP RVRVEDAEKI TYEDAKTAMR
101: RGILYLAALQ AKDGHWPAEN SGIMFLNSPF FICLYITGHL EEIFTVEHRK EFLRYMYNHQ NVDGGWGIDI ESDSCMLSTV LNYICLRILG VEPEQGSTCA
201: MARKWILDHG GATYTPLFGK VWLSVLGVYD WSGCKSIPPE FWMLPSFSPI NGGIVWIYFR ESFMALSYLY GKKFVATPTP LILQLREELY LHPYAQIVWS
301: QAQNLCAKED KYNQQSYLQD LFWKSVHMFS ENILNRWPFN KIIRQRALQT TMKLIHYHEE STRYLTTGCV PKVLCMLACW VEEPEGDYFK KHLARLHDFV
401: WIGDDGLKFQ QICGSQIWDT GFSLQVILAA DDDDEIIRST LIKGYDFLKK SQVTENPPGD HLNMFRHITK GGWNFPDKDQ GLPDSDCTAE SLECCLMFET
501: MPQEFIGEKM DVKRLYDAVT LILHFQSKNG GVTAWEPAPG KTWLEWFSPV EFMKDAVVEH EFVECTGSAL VAIARFMKQF PEYKKKQVKD FIKHGVKYLE
601: NLQMSDGSWY GSWGVCFIYG TFFAVRGLVA AGKTYNDCEA IRRAVRFLLE TQNEEGGWGE SYLSCSKRRY VPLSGRNKTN LVNTGQALIS LILGGQMERD
701: PRPVNRAAKV LINSQLDNGD YPQEEMSGVL SVNLKLHYPM YRNIFTLWAL AYYTQALRPL Q

Best Arabidopsis Sequence Match ( AT1G78500.1 )
(BLAST)

001: MWRLKIGAKG GDETHLFTTN NYTGRQTWEF DADACSPEEL AEVDEARQNF SINRSRFKIS ADLLWRMQFL REKKFEQKIP RVEIGDAENI TYKDAKTALR
101: RGILYFKALQ AEDGHWPAEN SGCLFFEAPF VICLYITGHL EKILTLEHRK ELLRYMYNHQ NEDGGWGIHV EGQSAMFCTV INYICLRILG VEADLDDIKG
201: SGCARARKWI LDHGGATYTP LIGKAWLSIL GVYDWSGCKP IPPEVWMLPT FSPFNGGTLW IYFRDIFMGV SYLYGKKFVA TPTPLILQLR EELYPQPYDK
301: ILWSQARNQC AKEDLYYPQS FLQEMFWKCV HILSENILNR WPCNKLIRQK ALRTTMELLH YQDEASRYFT GGCVPKPFHM LACWVEDPDG DYFKKHLARV
401: PDYIWIGEDG LKIQSFGSQL WDTAFSLQVM LAYQDVDDDD DEIRSTLIKG YSFLNKSQLT QNPPGDHRKM LKDIAKGGWT FSDQDQGWPV SDCTAESLEC
501: CLVFGSMPSE LIGEKMDVER LYDAVNLLLY FQSKNGGITV WEAARGRTWL EWLSPVEFME DTIVEHEYVE CTGSAIVALA RFLKEFPEHR REEVEKFIKN
601: AVKYIESFQM PDGSWYGNWG VCFMYGTFFA VRGLVAAGKT YQNCEPIRKA VQFILETQNV EGGWGESYLS CPNKKYTLLE GNRTNVVNTG QALMVLIMGG
701: QMERDPLPVH RAAKVLINSQ LDNGDFPQEE IMGVFKMNVM VHYATYRNIF TLWALTYYTK ALRVPLC

Arabidopsis Description

PEN6Seco-amyrin synthase [Source:UniProtKB/Swiss-Prot;Acc:Q9SYN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.