CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34478	Canola	cytosol, extracellular	48.29	53.08
CDY72111	Canola	cytosol	50.49	50.24
CDX85103	Canola	cytosol	12.68	49.06
CDY08878	Canola	cytosol	18.29	40.54
CDX79277	Canola	cytosol	64.39	38.43
CDX88494	Canola	endoplasmic reticulum, plasma membrane	67.07	35.44
CDX87419	Canola	cytosol	65.85	35.29
CDY57947	Canola	cytosol	64.39	34.42
CDY63677	Canola	cytosol	7.56	32.63
CDX87420	Canola	cytosol	60.49	32.29
CDX88493	Canola	cytosol	60.49	31.88
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	38.29	31.09
CDY35103	Canola	mitochondrion	58.54	30.46
CDY25386	Canola	cytosol, plasma membrane, plastid	41.46	29.01
VIT_10s0003g03650.t01	Wine grape	cytosol	50.98	27.54
CDY49432	Canola	cytosol	47.56	26.82
CDY52589	Canola	cytosol	47.56	26.82
VIT_10s0003g03530.t01	Wine grape	cytosol	47.32	26.72
CDX93093	Canola	cytosol	49.02	26.17
CDY50938	Canola	cytosol	48.54	26.08
VIT_10s0003g03520.t01	Wine grape	cytosol	47.8	26.03
CDX85104	Canola	cytosol	47.32	25.39
CDX77512	Canola	cytosol	47.32	24.97
TraesCS4A01G495100.1	Wheat	cytosol	45.85	24.83
Zm00001d024337_P001	Maize	cytosol	43.66	24.76
HORVU7Hr1G000400.1	Barley	cytosol, plastid	44.39	24.69
VIT_10s0003g03660.t01	Wine grape	cytosol	47.56	24.65
TraesCS7A01G003500.1	Wheat	cytosol	44.63	24.11
CDY38925	Canola	cytosol, nucleus, plasma membrane	43.17	24.05
TraesCS7D01G004000.1	Wheat	cytosol	44.39	23.98
EES13537	Sorghum	cytosol	43.66	23.49
CDY25392	Canola	cytosol	43.17	23.26
CDY29797	Canola	cytosol	42.68	23.0
Os08t0223900-00	Rice	cytosol	43.9	22.93
VIT_10s0003g03600.t01	Wine grape	cytosol, nucleus, plasma membrane	8.78	12.2
VIT_10s0003g03570.t01	Wine grape	cytosol	4.15	11.81
CDY20916	Canola	cytosol	7.07	11.46
CDY40048	Canola	cytosol	1.71	8.64
CDX89541	Canola	cytosol	2.68	7.48
CDY29789	Canola	cytosol	1.71	7.14
VIT_10s0003g03560.t01	Wine grape	cytosol, peroxisome, plastid	3.41	5.09
VIT_10s0003g03540.t01	Wine grape	cytosol	1.95	3.59
VIT_10s0003g03610.t01	Wine grape	cytosol	1.95	2.84
VIT_10s0003g03590.t01	Wine grape	cytosol, mitochondrion	0.73	2.65

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	GO:A0A078G7C9	UniProt:A0A078G7C9	EnsemblPlants:CDY20917	ProteinID:CDY20917
ProteinID:CDY20917.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0016866	EnsemblPlantsGene:GSBRNA2T00013278001	PFAM:PF13243
ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C	SUPFAM:SSF48239	InterPro:Squalene_cyclase
TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0004EE5DF1	:	:

Description

BnaC06g01370DBnaC06g01370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G7C9]

Coordinates

chrLK032114:+:331993..334921

Molecular Weight (calculated)

46307.4 Da

IEP (calculated)

5.780

GRAVY (calculated)

-0.173

Length

410 amino acids

Sequence
(BLAST)

001: MRMRKAIIIG SVEKPLCMLS CWIENPDGDH FKKHLSRISD LIWVAEDGLQ LQDQNKYTSG GSGSQLWETA FAMRALLASN LGVETFDVLR RRHSYIKKSL
101: VRENPPGDFK SMYHRSSKGA WTFSDRDHGW QVSDCTAEAL KCCMLLSTMP ADVVGQKIDH EHLCDSVNLL LSLQSDNGGF TAWEPACAPE WLELLNPTEF
201: FANVMAVREY LECTSSVIQA LVMVKQLYPD YRNKEIIKSM EKAVQFIESK QVSDGSWYGN WGICFIYGTW FALSGLAAVG KTYNNCLSMQ KGVDFLLEIQ
301: NEDGGWGESY LSCPEQKYIL LQGNASNLVQ TSWAMMGLIH AGQADRDVMP LHHAAKFIIT SQMESGDFPQ QEIVGAFMNN CMIHYATFRN TFPLWALAEY
401: RKAAFVTLQD

Best Arabidopsis Sequence Match ( AT1G66960.2 )
(BLAST)

001: MKKTWRIIIM WRLKVGEGKG KDPYLFSSNN FVGRQTWEFD PKAGTREERT AVEEARRSFF DNRSRVKPSS DLLWKMQFLK EAKFEQVIPP VKIDGGEAIT
101: YEKATNALRR GVAFLSALQA SDGHWPGEFT GPLCMLPPLV FCLYITGHLE EVFDAEHRKE MLRYIYCHQN EDGGWGFHIE SKSIMFTTTL NYICLRILGV
201: GPDGGLENAC KRARQWILSH GGVIYIPCWG KVWLSVLGIY DWSGVNPMPP EIWLLPYFLP IHLGKAFSYT RITYMPISYL YGKKFVGQIT PLIMQLREEL
301: HLQPYEEINW NKARHLCAKE DKYYPHPLVQ DLIWDALHTF VEPLLASWPI NKLVRKKALQ VAMKHIHYED ENSHYITIGC IEKNLCMLAC WIDNPDGNHF
401: KKHLSRIPDM MWVAEDGMKM QCFGSQLWMT GFAVQALLAS DPRDETYDVL RRAHDYIKKS QVRDNPSGDF KSMYRHISKG GWTLSDRDHG WQVSDCTAEA
501: AKCCMLLSTM PTDITGEKIN LEQLYDSVNL MLSLQSENGG FTAWEPVRAY KWMELMNPTD LFANAMTERE YTECTSAVLQ ALVIFNQLYP DHRTKEITKS
601: IEKAVQFIES KQLRDGSWYG SWGICFTYGT WFALCGLAAI GKTYNNCLSM RDGVHFLLNI QNEDGGWGES YMSCPEQRYI PLEGNRSNVV QTAWAMMALI
701: HAGQAKRDLI PLHSAAKFII TSQLENGDFP QQELLGASMS TCMLHYSTYK DIFPPWALAE YRKAAFIHHA DL

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G66960]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.