Factsheet for VIT_10s0003g03560.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
golgi 1
peroxisome 1
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g03590.t01	Wine grape	cytosol, mitochondrion	38.91	94.69
VIT_10s0003g03610.t01	Wine grape	cytosol	81.45	79.43
VIT_10s0003g03540.t01	Wine grape	cytosol	61.82	76.23
VIT_11s0065g00050.t01	Wine grape	cytosol, golgi, nucleus	15.64	64.18
VIT_09s0054g01500.t01	Wine grape	cytosol	21.82	60.0
VIT_09s0054g01130.t01	Wine grape	cytosol	37.45	55.08
VIT_09s0054g01370.t01	Wine grape	cytosol	24.0	49.25
VIT_10s0116g01070.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	28.73	47.88
VIT_09s0054g01290.t01	Wine grape	cytosol	20.0	42.64
VIT_04s0008g03000.t01	Wine grape	cytosol	45.45	40.72
VIT_09s0054g01480.t01	Wine grape	cytosol	58.55	38.33
VIT_00s0208g00080.t01	Wine grape	cytosol, endoplasmic reticulum, golgi	8.73	37.5
VIT_10s0003g03530.t01	Wine grape	cytosol	91.27	34.57
VIT_10s0003g03650.t01	Wine grape	cytosol	89.82	32.54
VIT_10s0003g03520.t01	Wine grape	cytosol	88.73	32.4
VIT_10s0003g03660.t01	Wine grape	cytosol	92.36	32.11
VIT_10s0003g03600.t01	Wine grape	cytosol, nucleus, plasma membrane	30.91	28.81
VIT_09s0054g01220.t01	Wine grape	cytosol	60.73	22.06
VIT_11s0065g00030.t01	Wine grape	cytosol	60.36	21.9
VIT_09s0054g01180.t01	Wine grape	cytosol	50.55	21.62
VIT_09s0054g01390.t01	Wine grape	cytosol	59.64	21.38
VIT_09s0054g01210.t01	Wine grape	cytosol	57.82	21.0
VIT_09s0054g01410.t01	Wine grape	cytosol	57.82	20.68
VIT_09s0054g01230.t01	Wine grape	cytosol	56.36	20.16
VIT_09s0018g00630.t01	Wine grape	cytosol	54.91	19.92
VIT_09s0054g01550.t01	Wine grape	cytosol	53.82	19.53
VIT_11s0065g00640.t01	Wine grape	cytosol	53.09	19.21
VIT_09s0054g01120.t01	Wine grape	cytosol	49.45	19.1
VIT_09s0054g01110.t01	Wine grape	cytosol	54.91	18.97
VIT_09s0054g01520.t01	Wine grape	cytosol	59.27	18.76
Zm00001d024337_P001	Maize	cytosol	45.82	17.43
VIT_10s0003g03550.t01	Wine grape	extracellular	6.18	17.0
TraesCS4A01G495100.1	Wheat	cytosol	46.18	16.78
TraesCS7D01G004000.1	Wheat	cytosol	46.18	16.73
Os08t0223900-00	Rice	cytosol	47.64	16.69
TraesCS7A01G003500.1	Wheat	cytosol	45.82	16.6
EES13537	Sorghum	cytosol	45.45	16.4
VIT_09s0054g01090.t01	Wine grape	cytosol	53.45	15.49
HORVU7Hr1G000400.1	Barley	cytosol, plastid	36.36	13.57
VIT_09s0054g01250.t01	Wine grape	cytosol	12.36	11.45
VIT_04s0008g02980.t01	Wine grape	mitochondrion	5.09	8.97
VIT_16s0115g00510.t01	Wine grape	cytosol, extracellular, plastid	2.18	8.82
VIT_09s0054g01170.t01	Wine grape	cytosol	1.09	6.67
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	1.45	5.88
VIT_09s0054g01360.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	8.73	4.69
VIT_09s0054g01340.t01	Wine grape	cytosol	5.82	3.86
VIT_09s0054g01420.t01	Wine grape	cytosol, extracellular, golgi	1.45	3.67
CDY20917	Canola	cytosol	5.09	3.41
VIT_09s0054g01140.t01	Wine grape	extracellular	1.82	2.53
VIT_09s0054g01280.t01	Wine grape	cytosol	2.18	1.69
VIT_10s0116g01050.t01	Wine grape	cytosol, nucleus, peroxisome	1.09	1.15
VIT_09s0054g01470.t01	Wine grape	cytosol	1.45	1.02
CDY34478	Canola	cytosol, extracellular	0.36	0.27
VIT_10s0003g03570.t01	Wine grape	cytosol	0.0	0.0
VIT_10s0116g01060.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01200.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01160.t01	Wine grape	extracellular	0.0	0.0
VIT_04s0008g02990.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_10s0003g03560	EMBL:FN595992	EnsemblPlants:VIT_10s0003g03560.t01	EnsemblPlantsGene:VIT_10s0003g03560	Gene3D:1.50.10.20	InterPro:SQ_cyclase_N
InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	PFAM:PF13249	ProteinID:CBI30896	ProteinID:CBI30896.3
SEG:seg	SUPFAM:SSF48239	UniParc:UPI0001BE34EB	UniProt:D7TK74	MapMan:9.1.4.3	:

Description

No Description!

Coordinates

chr10:+:6010888..6013524

Molecular Weight (calculated)

31756.5 Da

IEP (calculated)

7.561

GRAVY (calculated)

-0.300

Length

275 amino acids

Sequence
(BLAST)

001: MWKLKIAEGH GPWLYSLNNF VGRQIWELDP EAGTPEEREE VRKVQENFTK NRFRYKPNGN LLMRMQLIKE NQIDLSIPPM RLGEKEEVTY EAVTTVVRKA
101: VRLTRAIQAK DGHWPAENAG PLFFTPPLIM VLYFIGTLNI ALTPEHKLEL LRYITNHQNE DGGWGFHIEG HNTMLGTTLS YISMRILGVG PDDKAVAAGR
201: KWILDCGGAT YSQSWGKCFL SVLGLYEWSG CNPLPPEYWL FLSFLPMHPD KMWCYCRTIY MPMSYLYDKI SGTHY

Best Arabidopsis Sequence Match ( AT1G78950.1 )
(BLAST)

001: MWRLKIGEGN GDDPYLFTTN NFAGRQTWEF DPDGGSPEER HSVVEARRIF YDNRFHVKAS SDLLWRMQFL REKKFEQRIA PVKVEDSEKV TFETATSALR
101: RGIHFFSALQ ASDGHWPAEN AGPLFFLPPL VFCLYITGHL DEVFTSEHRK EILRYIYCHQ KEDGGWGLHI EGHSTMFCTT LNYICMRILG ESPDGGHDNA
201: CGRAREWILS HGGVTYIPSW GKTWLSILGV FDWSGSNPMP PEFWILPSFF PVHPAKMWSY CRMVYLPMSY LYGKRFVGPI TSLILQLRKE LYLQPYEEIN
301: WMKVRHLCAK EDTYYPRPLV QELVWDSLYI FAEPFLARWP FNKLLREKAL QLAMKHIHYE DENSRYITIG CVEKVLCMLA CWVEDPNGDY FKKHLSRISD
401: YLWMAEDGMK MQSFGSQLWD TGFAMQALLA SNLSSEISDV LRRGHEFIKN SQVGENPSGD YKSMYRHISK GAWTFSDRDH GWQVSDCTAH GLKCCLLFSM
501: LAPDIVGPKQ DPERLHDSVN ILLSLQSKNG GMTAWEPAGA PKWLELLNPT EMFSDIVIEH EYSECTSSAI QALSLFKQLY PDHRTTEITA FIKKAAEYLE
601: NMQTRDGSWY GNWGICFTYG TWFALAGLAA AGKTFNDCEA IRKGVQFLLA AQKDNGGWGE SYLSCSKKIY IAQVGEISNV VQTAWALMGL IHSGQAERDP
701: IPLHRAAKLI INSQLESGDF PQQQATGVFL KNCTLHYAAY RNIHPLWALA EYRARVSLP

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.