Factsheet for VIT_10s0116g01070.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 1
plastid 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0054g01290.t01	Wine grape	cytosol	30.3	38.76
VIT_00s0208g00080.t01	Wine grape	cytosol, endoplasmic reticulum, golgi	14.55	37.5
VIT_10s0003g03540.t01	Wine grape	cytosol	43.03	31.84
VIT_09s0054g01130.t01	Wine grape	cytosol	35.76	31.55
VIT_10s0003g03560.t01	Wine grape	cytosol, peroxisome, plastid	47.88	28.73
VIT_10s0003g03610.t01	Wine grape	cytosol	44.24	25.89
VIT_04s0008g03000.t01	Wine grape	cytosol	45.45	24.43
VIT_09s0054g01480.t01	Wine grape	cytosol	53.33	20.95
VIT_09s0054g01500.t01	Wine grape	cytosol	11.52	19.0
VIT_09s0054g01370.t01	Wine grape	cytosol	12.73	15.67
VIT_10s0003g03590.t01	Wine grape	cytosol, mitochondrion	10.3	15.04
VIT_11s0065g00640.t01	Wine grape	cytosol	62.42	13.55
VIT_09s0054g01550.t01	Wine grape	cytosol	60.0	13.06
VIT_09s0018g00630.t01	Wine grape	cytosol	60.0	13.06
VIT_09s0054g01110.t01	Wine grape	cytosol	61.82	12.81
KRH74136	Soybean	cytosol	58.79	12.65
VIT_09s0054g01180.t01	Wine grape	cytosol	49.09	12.6
Solyc05g047580.2.1	Tomato	cytosol	55.15	12.45
VIT_11s0065g00030.t01	Wine grape	cytosol	55.76	12.14
AT3G45130.2	Thale cress	cytosol	55.15	11.91
VIT_09s0054g01120.t01	Wine grape	cytosol	49.09	11.38
VIT_09s0054g01390.t01	Wine grape	cytosol	52.12	11.21
VIT_09s0054g01220.t01	Wine grape	cytosol	50.91	11.1
VIT_09s0054g01230.t01	Wine grape	cytosol	51.52	11.05
VIT_09s0054g01090.t01	Wine grape	cytosol	61.82	10.75
KRH13217	Soybean	cytosol	40.61	10.74
VIT_09s0054g01410.t01	Wine grape	cytosol	49.7	10.66
VIT_10s0003g03530.t01	Wine grape	cytosol	46.67	10.61
VIT_09s0054g01210.t01	Wine grape	cytosol	47.27	10.3
VIT_10s0003g03520.t01	Wine grape	cytosol	46.06	10.09
VIT_10s0003g03650.t01	Wine grape	cytosol	46.06	10.01
VIT_10s0003g03660.t01	Wine grape	cytosol	47.88	9.99
VIT_10s0003g03600.t01	Wine grape	cytosol, nucleus, plasma membrane	17.58	9.83
VIT_09s0054g01520.t01	Wine grape	cytosol	51.52	9.78
VIT_10s0003g03550.t01	Wine grape	extracellular	3.64	6.0
VIT_11s0065g00050.t01	Wine grape	cytosol, golgi, nucleus	1.82	4.48
VIT_09s0054g01250.t01	Wine grape	cytosol	6.06	3.37
VIT_09s0054g01340.t01	Wine grape	cytosol	7.88	3.14
VIT_04s0008g02980.t01	Wine grape	mitochondrion	1.82	1.92
VIT_09s0054g01420.t01	Wine grape	cytosol, extracellular, golgi	1.21	1.83
VIT_16s0115g00510.t01	Wine grape	cytosol, extracellular, plastid	0.61	1.47
VIT_09s0054g01280.t01	Wine grape	cytosol	1.82	0.85
VIT_10s0003g03570.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01470.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01360.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	0.0	0.0
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	0.0	0.0
VIT_09s0054g01200.t01	Wine grape	cytosol	0.0	0.0
VIT_10s0116g01050.t01	Wine grape	cytosol, nucleus, peroxisome	0.0	0.0
VIT_10s0116g01060.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01170.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01160.t01	Wine grape	extracellular	0.0	0.0
VIT_09s0054g01140.t01	Wine grape	extracellular	0.0	0.0
VIT_04s0008g02990.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_10s0116g01070	EMBL:FN594953	EnsemblPlants:VIT_10s0116g01070.t01	EnsemblPlantsGene:VIT_10s0116g01070	Gene3D:1.50.10.20	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:SQ_cyclase_N	PANTHER:PTHR11764	PANTHER:PTHR11764:SF36	PFAM:PF13249
ProteinID:CCB43965	ProteinID:CCB43965.1	SEG:seg	SUPFAM:SSF81853	TMHMM:TMhelix	UniParc:UPI000210AC3B
UniProt:F6GVI1	MapMan:9.1.4.3	:	:	:	:

Description

No Description!

Coordinates

chr10_random:-:519608..521720

Molecular Weight (calculated)

18222.1 Da

IEP (calculated)

5.993

GRAVY (calculated)

-0.024

Length

165 amino acids

Sequence
(BLAST)

001: MLAKEKPCGK KLVVAIKVGD EEEISEEAVA TTLRKALSFY STLQVEDGHW PNDYGGPLFL LPGLVIGLYV TGAINTILSS EHQQEMCRYL YNHQNRDGGW
101: GLHIKGHNIM FCTTLSYITL RFLGEGADGG DGAMGKARKW ILDLDGITCI PSWGKMWLSV LGVFD

Best Arabidopsis Sequence Match ( AT2G07050.1 )
(BLAST)

001: MWKLKIAEGG SPWLRTTNNH VGRQFWEFDP NLGTPEDLAA VEEARKSFSD NRFVQKHSAD LLMRLQFSRE NLISPVLPQV KIEDTDDVTE EMVETTLKRG
101: LDFYSTIQAH DGHWPGDYGG PMFLLPGLII TLSITGALNT VLSEQHKQEM RRYLYNHQNE DGGWGLHIEG PSTMFGSVLN YVTLRLLGEG PNDGDGDMEK
201: GRDWILNHGG ATNITSWGKM WLSVLGAFEW SGNNPLPPEI WLLPYFLPIH PGRMWCHCRM VYLPMSYLYG KRFVGPITST VLSLRKELFT VPYHEVNWNE
301: ARNLCAKEDL YYPHPLVQDI LWASLHKIVE PVLMRWPGAN LREKAIRTAI EHIHYEDENT RYICIGPVNK VLNMLCCWVE DPNSEAFKLH LPRIHDFLWL
401: AEDGMKMQGY NGSQLWDTGF AIQAILATNL VEEYGPVLEK AHSFVKNSQV LEDCPGDLNY WYRHISKGAW PFSTADHGWP ISDCTAEGLK AALLLSKVPK
501: AIVGEPIDAK RLYEAVNVII SLQNADGGLA TYELTRSYPW LELINPAETF GDIVIDYPYV ECTSAAIQAL ISFRKLYPGH RKKEVDECIE KAVKFIESIQ
601: AADGSWYGSW AVCFTYGTWF GVKGLVAVGK TLKNSPHVAK ACEFLLSKQQ PSGGWGESYL SCQDKVYSNL DGNRSHVVNT AWAMLALIGA GQAEVDRKPL
701: HRAARYLINA QMENGDFPQQ EIMGVFNRNC MITYAAYRNI FPIWALGEYR CQVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.