Factsheet for VIT_00s0208g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, cytosol

Predictor Summary:

nucleus 2
cytosol 3
golgi 1
extracellular 1
endoplasmic reticulum 2
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0116g01070.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	37.5	14.55
VIT_10s0003g03540.t01	Wine grape	cytosol	34.38	9.87
VIT_04s0008g03000.t01	Wine grape	cytosol	45.31	9.45
VIT_10s0003g03600.t01	Wine grape	cytosol, nucleus, plasma membrane	42.19	9.15
VIT_10s0003g03560.t01	Wine grape	cytosol, peroxisome, plastid	37.5	8.73
VIT_10s0003g03610.t01	Wine grape	cytosol	37.5	8.51
VIT_09s0054g01130.t01	Wine grape	cytosol	23.44	8.02
VIT_09s0054g01480.t01	Wine grape	cytosol	43.75	6.67
VIT_09s0054g01180.t01	Wine grape	cytosol	46.88	4.67
Zm00001d024337_P001	Maize	cytosol	51.56	4.56
VIT_09s0054g01250.t01	Wine grape	cytosol	20.31	4.38
VIT_09s0054g01220.t01	Wine grape	cytosol	51.56	4.36
VIT_09s0054g01120.t01	Wine grape	cytosol	48.44	4.35
VIT_11s0065g00640.t01	Wine grape	cytosol	51.56	4.34
VIT_09s0054g01410.t01	Wine grape	cytosol	51.56	4.29
TraesCS4A01G495100.1	Wheat	cytosol	50.0	4.23
TraesCS7A01G003500.1	Wheat	cytosol	50.0	4.22
HORVU7Hr1G000400.1	Barley	cytosol, plastid	48.44	4.21
Os08t0223900-00	Rice	cytosol	51.56	4.2
EES13537	Sorghum	cytosol	50.0	4.2
VIT_09s0054g01390.t01	Wine grape	cytosol	50.0	4.17
VIT_10s0003g03530.t01	Wine grape	cytosol	46.88	4.13
VIT_10s0003g03520.t01	Wine grape	cytosol	48.44	4.12
VIT_09s0018g00630.t01	Wine grape	cytosol	48.44	4.09
VIT_11s0065g00030.t01	Wine grape	cytosol	48.44	4.09
VIT_10s0003g03650.t01	Wine grape	cytosol	48.44	4.08
TraesCS7D01G004000.1	Wheat	cytosol	48.44	4.08
VIT_09s0054g01210.t01	Wine grape	cytosol	46.88	3.96
VIT_10s0003g03660.t01	Wine grape	cytosol	48.44	3.92
VIT_09s0054g01230.t01	Wine grape	cytosol	46.88	3.9
VIT_09s0054g01110.t01	Wine grape	cytosol	48.44	3.89
VIT_09s0054g01550.t01	Wine grape	cytosol	45.31	3.83
VIT_09s0054g01520.t01	Wine grape	cytosol	51.56	3.8
VIT_09s0054g01090.t01	Wine grape	cytosol	50.0	3.37
VIT_09s0054g01500.t01	Wine grape	cytosol	4.69	3.0
VIT_09s0054g01420.t01	Wine grape	cytosol, extracellular, golgi	4.69	2.75
VIT_10s0003g03550.t01	Wine grape	extracellular	3.12	2.0
VIT_09s0054g01360.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	15.62	1.95
VIT_09s0054g01140.t01	Wine grape	extracellular	4.69	1.52
VIT_10s0003g03570.t01	Wine grape	cytosol	3.12	1.39
VIT_09s0054g01280.t01	Wine grape	cytosol	6.25	1.13
VIT_04s0008g02990.t01	Wine grape	cytosol	1.56	1.06
VIT_09s0054g01470.t01	Wine grape	cytosol	6.25	1.02
VIT_09s0054g01340.t01	Wine grape	cytosol	6.25	0.97
VIT_10s0116g01050.t01	Wine grape	cytosol, nucleus, peroxisome	3.12	0.76
AT1G78480.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	0.0	0.0
VIT_04s0008g02980.t01	Wine grape	mitochondrion	0.0	0.0
VIT_10s0116g01060.t01	Wine grape	cytosol	0.0	0.0
VIT_11s0065g00050.t01	Wine grape	cytosol, golgi, nucleus	0.0	0.0
VIT_16s0115g00510.t01	Wine grape	cytosol, extracellular, plastid	0.0	0.0
VIT_10s0003g03590.t01	Wine grape	cytosol, mitochondrion	0.0	0.0
VIT_09s0054g01160.t01	Wine grape	extracellular	0.0	0.0
VIT_09s0054g01370.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	0.0	0.0
VIT_09s0054g01290.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01170.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01200.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s0208g00080	EMBL:FN595783	EnsemblPlants:VIT_00s0208g00080.t01	EnsemblPlantsGene:VIT_00s0208g00080	Gene3D:1.50.10.20	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:SQ_cyclase_N	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764	PANTHER:PTHR11764:SF36
PFAM:PF13249	ProteinID:CCB52615	ProteinID:CCB52615.1	SUPFAM:SSF48239	TMHMM:TMhelix	UniParc:UPI00021090D9
UniProt:F6HJL5	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:12742513..12742920

Molecular Weight (calculated)

7257.8 Da

IEP (calculated)

7.521

GRAVY (calculated)

-0.084

Length

64 amino acids

Sequence
(BLAST)

1: MDKERKWIPD RGGITCIPSW GIMWLSVLGV FDRKGNDPLP PEIWLLPYFV HMHPGFSSSS SLAS

Best Arabidopsis Sequence Match ( AT2G07050.2 )
(BLAST)

001: MVETTLKRGL DFYSTIQAHD GHWPGDYGGP MFLLPGLIIT LSITGALNTV LSEQHKQEMR RYLYNHQNED GGWGLHIEGP STMFGSVLNY VTLRLLGEGP
101: NDGDGDMEKG RDWILNHGGA TNITSWGKMW LSVLGAFEWS GNNPLPPEIW LLPYFLPIHP GRMWCHCRMV YLPMSYLYGK RFVGPITSTV LSLRKELFTV
201: PYHEVNWNEA RNLCAKEDLY YPHPLVQDIL WASLHKIVEP VLMRWPGANL REKAIRTAIE HIHYEDENTR YICIGPVNKV LNMLCCWVED PNSEAFKLHL
301: PRIHDFLWLA EDGMKMQGYN GSQLWDTGFA IQAILATNLV EEYGPVLEKA HSFVKNSQVL EDCPGDLNYW YRHISKGAWP FSTADHGWPI SDCTAEGLKA
401: ALLLSKVPKA IVGEPIDAKR LYEAVNVIIS LQNADGGLAT YELTRSYPWL ELINPAETFG DIVIDYPYVE CTSAAIQALI SFRKLYPGHR KKEVDECIEK
501: AVKFIESIQA ADGSWYGSWA VCFTYGTWFG VKGLVAVGKT LKNSPHVAKA CEFLLSKQQP SGGWGESYLS CQDKVYSNLD GNRSHVVNTA WAMLALIGAG
601: QAEVDRKPLH RAARYLINAQ MENGDFPQQE IMGVFNRNCM ITYAAYRNIF PIWALGEYRC QVLLQQGE

Arabidopsis Description

CAS1Cycloartenol synthase [Source:UniProtKB/Swiss-Prot;Acc:P38605]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.