Factsheet for VIT_10s0003g03530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g03590.t01	Wine grape	cytosol, mitochondrion	14.6	93.81
VIT_10s0003g03600.t01	Wine grape	cytosol, nucleus, plasma membrane	37.88	93.22
VIT_10s0003g03650.t01	Wine grape	cytosol	96.97	92.75
VIT_10s0003g03570.t01	Wine grape	cytosol	18.32	92.36
VIT_10s0003g03560.t01	Wine grape	cytosol, peroxisome, plastid	34.57	91.27
VIT_10s0003g03610.t01	Wine grape	cytosol	33.47	86.17
VIT_10s0003g03520.t01	Wine grape	cytosol	89.12	85.92
VIT_10s0003g03660.t01	Wine grape	cytosol	92.98	85.33
VIT_10s0003g03540.t01	Wine grape	cytosol	24.66	80.27
VIT_11s0065g00050.t01	Wine grape	cytosol, golgi, nucleus	6.2	67.16
VIT_09s0054g01160.t01	Wine grape	extracellular	9.23	66.34
VIT_10s0003g03550.t01	Wine grape	extracellular	8.82	64.0
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	5.79	61.76
VIT_09s0054g01220.t01	Wine grape	cytosol	64.19	61.56
VIT_09s0054g01500.t01	Wine grape	cytosol	8.4	61.0
VIT_09s0054g01390.t01	Wine grape	cytosol	62.12	58.8
VIT_09s0054g01410.t01	Wine grape	cytosol	61.98	58.52
VIT_11s0065g00030.t01	Wine grape	cytosol	60.88	58.31
VIT_09s0054g01230.t01	Wine grape	cytosol	61.16	57.74
VIT_09s0054g01470.t01	Wine grape	cytosol	30.99	57.11
VIT_04s0008g03000.t01	Wine grape	cytosol	24.1	57.0
VIT_09s0054g01210.t01	Wine grape	cytosol	59.37	56.94
VIT_09s0054g01360.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	39.81	56.45
VIT_09s0054g01130.t01	Wine grape	cytosol	14.46	56.15
VIT_09s0054g01370.t01	Wine grape	cytosol	10.19	55.22
VIT_04s0008g02980.t01	Wine grape	mitochondrion	11.57	53.85
VIT_09s0054g01180.t01	Wine grape	cytosol	47.38	53.5
VIT_11s0065g00640.t01	Wine grape	cytosol	55.92	53.42
VIT_09s0018g00630.t01	Wine grape	cytosol	55.23	52.9
VIT_09s0054g01550.t01	Wine grape	cytosol	55.1	52.77
VIT_09s0054g01340.t01	Wine grape	cytosol	29.61	51.93
VIT_09s0054g01120.t01	Wine grape	cytosol	50.83	51.83
VIT_10s0116g01060.t01	Wine grape	cytosol	6.34	51.69
VIT_09s0054g01140.t01	Wine grape	extracellular	14.05	51.52
VIT_09s0054g01200.t01	Wine grape	cytosol	7.16	51.49
VIT_16s0115g00510.t01	Wine grape	cytosol, extracellular, plastid	4.82	51.47
VIT_09s0054g01520.t01	Wine grape	cytosol	61.16	51.09
VIT_09s0054g01110.t01	Wine grape	cytosol	55.1	50.25
VIT_09s0054g01480.t01	Wine grape	cytosol	28.93	50.0
TraesCS4A01G495100.1	Wheat	cytosol	51.38	49.27
TraesCS7D01G004000.1	Wheat	cytosol	50.83	48.62
TraesCS7A01G003500.1	Wheat	cytosol	50.55	48.35
EES13537	Sorghum	cytosol	50.55	48.16
VIT_10s0116g01050.t01	Wine grape	cytosol, nucleus, peroxisome	17.22	47.71
Os08t0223900-00	Rice	cytosol	51.38	47.52
CDY20917	Canola	cytosol	26.72	47.32
VIT_00s0208g00080.t01	Wine grape	cytosol, endoplasmic reticulum, golgi	4.13	46.88
HORVU7Hr1G000400.1	Barley	cytosol, plastid	47.38	46.68
VIT_10s0116g01070.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	10.61	46.67
Zm00001d024337_P001	Maize	cytosol	46.42	46.61
VIT_09s0054g01290.t01	Wine grape	cytosol	8.26	46.51
VIT_09s0054g01250.t01	Wine grape	cytosol	18.59	45.45
VIT_09s0054g01280.t01	Wine grape	cytosol	20.8	42.54
VIT_09s0054g01170.t01	Wine grape	cytosol	2.62	42.22
VIT_09s0054g01090.t01	Wine grape	cytosol	53.99	41.31
VIT_09s0054g01420.t01	Wine grape	cytosol, extracellular, golgi	5.79	38.53
VIT_04s0008g02990.t01	Wine grape	cytosol	4.27	32.98
CDY34478	Canola	cytosol, extracellular	16.67	32.44

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	ProteinID:CCB55795	ProteinID:CCB55795.1	UniProt:F6HLS1	EMBL:FN595992
GO:GO:0003674	GO:GO:0003824	GO:GO:0016853	GO:GO:0016866	PFAM:PF13243	PFAM:PF13249
PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	SUPFAM:SSF48239	InterPro:Squalene_cyclase
TIGRFAMs:TIGR01787	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0002109346	ArrayExpress:VIT_10s0003g03530	EnsemblPlantsGene:VIT_10s0003g03530	EnsemblPlants:VIT_10s0003g03530.t01

Description

Terpene cyclase/mutase family member [Source:UniProtKB/TrEMBL;Acc:F6HLS1]

Coordinates

chr10:+:5963273..5968899

Molecular Weight (calculated)

83439.6 Da

IEP (calculated)

6.812

GRAVY (calculated)

-0.402

Length

726 amino acids

Sequence
(BLAST)

001: MWKLKIAEGH GPWLYSLNNF VGRQIWEFDP EAGTPEEREE VWKVQENFTK NRFRYKPNGD LLMRMQLIKE NQIDLSIPPV RLGENEEVTC EAVTTAVRKS
101: VRLNRAIQAK DGHWPAENAG PLFFTPPLIM VLYFTGTLNI ALTPEHKVEL LRYITNHQNE DGGWGFHIEG HSTMLGTTLN YISMRVLGVG PDDKAVAAGR
201: KWILDRGGAT YSPSWGKCYL SVFGLYEWSG CNPLPPEFWL FPSFLPMHPD KMWCYCRTIY MPMSYLYGTR FQAPITDLVV QLREEMHTEP YHEINWAKAR
301: LLCAKEDYYY PHSLVQDVLW GGLYHFGEPI LKHWPVSKIR ERAVKKAIDI IHWEDENSRY ITPGCVEKAF HMMAVWAENP DSNSDVFKHH LARIPDYLWM
401: AEDGMKVQSF GSQLWDTSLC IQAILESGMV EEYGTTLKKG HDYVKLSQCQ ENPSGDYRSR YRHFSKGAWT FSDRDHGWQV SDCTSEALRG KSGGLAVWEP
501: AGAEEWLEKL NPSELFANIV TEHEYVECTS SAIQTLLLFK KLYPNHRRKE VDNFIEKATR YVENVQRPNG SWYGGWGVCF TYAAWFALSG LAAVGKTYSN
601: SKTVRKGVDF LLSKQKANGG WGESYLSCPD MVYVHLEGDR TNLVQTAWCL MGLIEAGQVE KDPTPLHKAA KLLINSQLDS GDFPQEEITG VYMNNCMLHY
701: ASYRNIFPTW ALGMYHRRVL KPLQKL

Best Arabidopsis Sequence Match ( AT1G78950.1 )
(BLAST)

001: MWRLKIGEGN GDDPYLFTTN NFAGRQTWEF DPDGGSPEER HSVVEARRIF YDNRFHVKAS SDLLWRMQFL REKKFEQRIA PVKVEDSEKV TFETATSALR
101: RGIHFFSALQ ASDGHWPAEN AGPLFFLPPL VFCLYITGHL DEVFTSEHRK EILRYIYCHQ KEDGGWGLHI EGHSTMFCTT LNYICMRILG ESPDGGHDNA
201: CGRAREWILS HGGVTYIPSW GKTWLSILGV FDWSGSNPMP PEFWILPSFF PVHPAKMWSY CRMVYLPMSY LYGKRFVGPI TSLILQLRKE LYLQPYEEIN
301: WMKVRHLCAK EDTYYPRPLV QELVWDSLYI FAEPFLARWP FNKLLREKAL QLAMKHIHYE DENSRYITIG CVEKVLCMLA CWVEDPNGDY FKKHLSRISD
401: YLWMAEDGMK MQSFGSQLWD TGFAMQALLA SNLSSEISDV LRRGHEFIKN SQVGENPSGD YKSMYRHISK GAWTFSDRDH GWQVSDCTAH GLKCCLLFSM
501: LAPDIVGPKQ DPERLHDSVN ILLSLQSKNG GMTAWEPAGA PKWLELLNPT EMFSDIVIEH EYSECTSSAI QALSLFKQLY PDHRTTEITA FIKKAAEYLE
601: NMQTRDGSWY GNWGICFTYG TWFALAGLAA AGKTFNDCEA IRKGVQFLLA AQKDNGGWGE SYLSCSKKIY IAQVGEISNV VQTAWALMGL IHSGQAERDP
701: IPLHRAAKLI INSQLESGDF PQQQATGVFL KNCTLHYAAY RNIHPLWALA EYRARVSLP

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.