Factsheet for VIT_10s0003g03590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0065g00050.t01	Wine grape	cytosol, golgi, nucleus	38.05	64.18
VIT_09s0054g01500.t01	Wine grape	cytosol	41.59	47.0
VIT_09s0054g01370.t01	Wine grape	cytosol	52.21	44.03
VIT_10s0003g03560.t01	Wine grape	cytosol, peroxisome, plastid	94.69	38.91
VIT_10s0003g03610.t01	Wine grape	cytosol	92.92	37.23
VIT_09s0054g01130.t01	Wine grape	cytosol	38.94	23.53
VIT_10s0003g03540.t01	Wine grape	cytosol	42.48	21.52
VIT_04s0008g03000.t01	Wine grape	cytosol	46.02	16.94
VIT_10s0003g03530.t01	Wine grape	cytosol	93.81	14.6
VIT_09s0054g01480.t01	Wine grape	cytosol	53.1	14.29
VIT_10s0003g03650.t01	Wine grape	cytosol	92.92	13.83
VIT_10s0003g03520.t01	Wine grape	cytosol	92.04	13.81
VIT_10s0003g03660.t01	Wine grape	cytosol	95.58	13.65
VIT_10s0116g01070.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	15.04	10.3
VIT_09s0054g01180.t01	Wine grape	cytosol	53.98	9.49
VIT_10s0003g03550.t01	Wine grape	extracellular	7.96	9.0
VIT_11s0065g00030.t01	Wine grape	cytosol	57.52	8.58
VIT_09s0054g01120.t01	Wine grape	cytosol	53.98	8.57
VIT_09s0054g01210.t01	Wine grape	cytosol	53.98	8.06
VIT_09s0054g01220.t01	Wine grape	cytosol	53.98	8.06
VIT_09s0054g01230.t01	Wine grape	cytosol	53.98	7.93
VIT_09s0018g00630.t01	Wine grape	cytosol	53.1	7.92
VIT_09s0054g01550.t01	Wine grape	cytosol	53.1	7.92
VIT_09s0054g01110.t01	Wine grape	cytosol	54.87	7.79
VIT_09s0054g01390.t01	Wine grape	cytosol	52.21	7.69
VIT_09s0054g01410.t01	Wine grape	cytosol	51.33	7.54
VIT_11s0065g00640.t01	Wine grape	cytosol	49.56	7.37
VIT_09s0054g01520.t01	Wine grape	cytosol	53.98	7.02
Os08t0223900-00	Rice	cytosol	48.67	7.01
TraesCS7D01G004000.1	Wheat	cytosol	46.9	6.98
EES13537	Sorghum	cytosol	46.9	6.96
Zm00001d024337_P001	Maize	cytosol	44.25	6.92
TraesCS4A01G495100.1	Wheat	cytosol	46.02	6.87
TraesCS7A01G003500.1	Wheat	cytosol	46.02	6.85
VIT_04s0008g02980.t01	Wine grape	mitochondrion	8.85	6.41
VIT_09s0054g01090.t01	Wine grape	cytosol	47.79	5.69
VIT_09s0054g01290.t01	Wine grape	cytosol	6.19	5.43
VIT_16s0115g00510.t01	Wine grape	cytosol, extracellular, plastid	2.65	4.41
HORVU7Hr1G000400.1	Barley	cytosol, plastid	22.12	3.39
VIT_09s0054g01420.t01	Wine grape	cytosol, extracellular, golgi	1.77	1.83
CDY20917	Canola	cytosol	2.65	0.73
VIT_09s0054g01280.t01	Wine grape	cytosol	0.88	0.28
VIT_10s0116g01050.t01	Wine grape	cytosol, nucleus, peroxisome	0.0	0.0
VIT_10s0116g01060.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01340.t01	Wine grape	cytosol	0.0	0.0
VIT_10s0003g03600.t01	Wine grape	cytosol, nucleus, plasma membrane	0.0	0.0
VIT_10s0003g03570.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01470.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01360.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	0.0	0.0
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	0.0	0.0
VIT_09s0054g01250.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01200.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01170.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01160.t01	Wine grape	extracellular	0.0	0.0
VIT_09s0054g01140.t01	Wine grape	extracellular	0.0	0.0
VIT_04s0008g02990.t01	Wine grape	cytosol	0.0	0.0
VIT_00s0208g00080.t01	Wine grape	cytosol, endoplasmic reticulum, golgi	0.0	0.0
CDY34478	Canola	cytosol, extracellular	0.0	0.0

Protein Annotations

ArrayExpress:VIT_10s0003g03590	EMBL:FN595992	EnsemblPlants:VIT_10s0003g03590.t01	EnsemblPlantsGene:VIT_10s0003g03590	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764
PANTHER:PTHR11764:SF16	ProteinID:CCB55797	ProteinID:CCB55797.1	SEG:seg	SUPFAM:SSF48239	UniParc:UPI0002109348
UniProt:F6HLS3	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr10:+:6053430..6055391

Molecular Weight (calculated)

13282.0 Da

IEP (calculated)

10.098

GRAVY (calculated)

-0.754

Length

113 amino acids

Sequence
(BLAST)

001: MWKLKIAGGH GPWLYSLNNF VGRQIWEFDR EAGTPEEREE VRKVQENFTK NRFRYKPNGD LLMRMQLIKE NQIDLSIPPV RLGEKEEVTY EAVTTVVRKA
101: VRLNRAIQAK DGH

Best Arabidopsis Sequence Match ( AT1G78960.1 )
(BLAST)

001: MWKLKIGEGN GEDPYLFSSN NFVGRQTWEF DPKAGTPEER AAVEDARRNY LDNRPRVKGC SDLLWRMQFL KEAKFEQVIP PVKIDDGEGI TYKNATDALR
101: RAVSFYSALQ SSDGHWPAEI TGTLFFLPPL VFCFYITGHL EKIFDAEHRK EMLRHIYCHQ NEDGGWGLHI EGKSVMFCTV LNYICLRMLG EGPNGGRNNA
201: CKRARQWILD HGGVTYIPSW GKIWLSILGI YDWSGTNPMP PEIWLLPSFF PIHLGKTLCY TRMVYMPMSY LYGKRFVGPL TPLIMLLRKE LHLQPYEEIN
301: WNKARRLCAK EDMIYPHPLV QDLLWDTLHN FVEPILTNWP LKKLVREKAL RVAMEHIHYE DENSHYITIG CVEKVLCMLA CWIENPNGDH FKKHLARIPD
401: FMWVAEDGLK MQSFGSQLWD TVFAIQALLA CDLSDETDDV LRKGHSFIKK SQVRENPSGD FKSMYRHISK GAWTLSDRDH GWQVSDCTAE ALKCCMLLSM
501: MPAEVVGQKI DPEQLYDSVN LLLSLQGEKG GLTAWEPVRA QEWLELLNPT DFFTCVMAER EYVECTSAVI QALVLFKQLY PDHRTKEIIK SIEKGVQFIE
601: SKQTPDGSWH GNWGICFIYA TWFALSGLAA AGKTYKSCLA VRKGVDFLLA IQEEDGGWGE SHLSCPEQRY IPLEGNRSNL VQTAWAMMGL IHAGQAERDP
701: TPLHRAAKLI ITSQLENGDF PQQEILGVFM NTCMLHYATY RNIFPLWALA EYRKAAFATH QDL

Arabidopsis Description

LUP2Amyrin synthase LUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.