Factsheet for VIT_10s0003g03520.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g03600.t01	Wine grape	cytosol, nucleus, plasma membrane	37.05	94.58
VIT_10s0003g03590.t01	Wine grape	cytosol, mitochondrion	13.81	92.04
VIT_10s0003g03650.t01	Wine grape	cytosol	89.91	89.2
VIT_10s0003g03530.t01	Wine grape	cytosol	85.92	89.12
VIT_10s0003g03560.t01	Wine grape	cytosol, peroxisome, plastid	32.4	88.73
VIT_10s0003g03570.t01	Wine grape	cytosol	16.07	84.03
VIT_10s0003g03660.t01	Wine grape	cytosol	87.78	83.57
VIT_10s0003g03610.t01	Wine grape	cytosol	31.08	82.98
VIT_10s0003g03540.t01	Wine grape	cytosol	23.64	79.82
VIT_09s0054g01160.t01	Wine grape	extracellular	8.9	66.34
VIT_10s0003g03550.t01	Wine grape	extracellular	8.63	65.0
VIT_11s0065g00050.t01	Wine grape	cytosol, golgi, nucleus	5.71	64.18
VIT_09s0054g01220.t01	Wine grape	cytosol	61.22	60.9
VIT_09s0054g01500.t01	Wine grape	cytosol	7.97	60.0
VIT_09s0054g01390.t01	Wine grape	cytosol	59.76	58.67
VIT_09s0054g01410.t01	Wine grape	cytosol	59.5	58.26
VIT_11s0065g00030.t01	Wine grape	cytosol	57.77	57.39
VIT_09s0054g01230.t01	Wine grape	cytosol	58.57	57.35
VIT_09s0054g01210.t01	Wine grape	cytosol	57.64	57.33
VIT_09s0054g01360.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	38.91	57.23
VIT_09s0054g01470.t01	Wine grape	cytosol	29.88	57.11
VIT_04s0008g03000.t01	Wine grape	cytosol	22.58	55.37
VIT_09s0054g01130.t01	Wine grape	cytosol	13.41	54.01
VIT_09s0054g01120.t01	Wine grape	cytosol	50.2	53.09
VIT_09s0054g01370.t01	Wine grape	cytosol	9.43	52.99
VIT_09s0054g01340.t01	Wine grape	cytosol	29.08	52.9
VIT_09s0054g01180.t01	Wine grape	cytosol	44.62	52.26
VIT_09s0018g00630.t01	Wine grape	cytosol	52.46	52.11
VIT_11s0065g00640.t01	Wine grape	cytosol	52.46	51.97
VIT_09s0054g01550.t01	Wine grape	cytosol	52.06	51.72
VIT_09s0054g01200.t01	Wine grape	cytosol	6.91	51.49
VIT_04s0008g02990.t01	Wine grape	cytosol	6.37	51.06
VIT_09s0054g01140.t01	Wine grape	extracellular	13.41	51.01
VIT_09s0054g01520.t01	Wine grape	cytosol	58.83	50.98
VIT_09s0054g01480.t01	Wine grape	cytosol	28.15	50.48
VIT_09s0054g01420.t01	Wine grape	cytosol, extracellular, golgi	7.17	49.54
VIT_09s0054g01110.t01	Wine grape	cytosol	52.32	49.5
TraesCS7D01G004000.1	Wheat	cytosol	49.4	49.01
TraesCS4A01G495100.1	Wheat	cytosol	49.14	48.88
EES13537	Sorghum	cytosol	49.14	48.56
VIT_00s0208g00080.t01	Wine grape	cytosol, endoplasmic reticulum, golgi	4.12	48.44
TraesCS7A01G003500.1	Wheat	cytosol	48.47	48.09
VIT_09s0054g01250.t01	Wine grape	cytosol	18.86	47.81
CDY20917	Canola	cytosol	26.03	47.8
Os08t0223900-00	Rice	cytosol	49.67	47.64
HORVU7Hr1G000400.1	Barley	cytosol, plastid	46.22	47.22
VIT_10s0116g01060.t01	Wine grape	cytosol	5.58	47.19
VIT_16s0115g00510.t01	Wine grape	cytosol, extracellular, plastid	4.25	47.06
VIT_10s0116g01050.t01	Wine grape	cytosol, nucleus, peroxisome	16.33	46.95
Zm00001d024337_P001	Maize	cytosol	45.02	46.89
VIT_09s0054g01280.t01	Wine grape	cytosol	22.05	46.76
VIT_09s0054g01290.t01	Wine grape	cytosol	7.97	46.51
VIT_10s0116g01070.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	10.09	46.06
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	4.12	45.59
VIT_04s0008g02980.t01	Wine grape	mitochondrion	9.03	43.59
VIT_09s0054g01090.t01	Wine grape	cytosol	51.39	40.78
CDY34478	Canola	cytosol, extracellular	17.8	35.92
VIT_09s0054g01170.t01	Wine grape	cytosol	1.46	24.44

Protein Annotations

Gene3D:1.50.10.20	EntrezGene:100256581	wikigene:100256581	MapMan:9.1.4.3	ProteinID:CBI30890	ProteinID:CBI30890.3
UniProt:D7TK68	EMBL:FN595992	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0016853	GO:GO:0016866	EntrezGene:LOC100256581	wikigene:LOC100256581	PFAM:PF13243
PFAM:PF13249	ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N
SUPFAM:SSF48239	InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	TMHMM:TMhelix	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI0001BE349B	ArrayExpress:VIT_10s0003g03520	EnsemblPlantsGene:VIT_10s0003g03520	EnsemblPlants:VIT_10s0003g03520.t01	RefSeq:XP_002269345	RefSeq:XP_002269345.1

Description

Terpene cyclase/mutase family member [Source:UniProtKB/TrEMBL;Acc:D7TK68]

Coordinates

chr10:-:5939779..5946651

Molecular Weight (calculated)

86403.4 Da

IEP (calculated)

6.296

GRAVY (calculated)

-0.300

Length

753 amino acids

Sequence
(BLAST)

001: MWMLKVAEGH GPWLYSLNNY LGRQIWEFDP EAGTPEEREE VRKVQENFTK NRFRYKPNGD LLMRMQLIKE NQIDLSIPPV RLGEKEKVTY EAVTTAVKKA
101: VRLNRAIQAK DGHWPAENAG PLFFTPPLIM VLYFTGTLNI ALTPEHKVEL LRYITNHQNE DGGWGFHIEG HSTMLGTTLS YISMRILGVG PDDKVVAAGR
201: KWILDRGGAT YSPSWGKCYL SVFGLYEWSG CNPLPPEFWL FPSYLPMHPD KMWCYSRTVY MPMSYLYGTR FQAPITDLVL QLREEMHTEP YHEIDWAKAR
301: LLCTKEDYYY PHSLIQDMIW GGLYHFGEPI LKRWPVSKIR ETAVKKAIEI IHWEDENSRY LTPGCVHKAF HMMAVWAENP DSNLNAFKHH LARIPDYLWL
401: AEDGMKVQSF GSQLWDASFC IQAILESGMV EEYGTALKKG HDFIKLSQCQ ENPSGDYRSR YRHFSKGAWT FSDRDHGWQV SDCTSEALRV LLLLSQFPEE
501: LVGEKAEPQC LFDAINFLFS FQGKSGGLAL WEPAGAEEWL EKLNPSELFA NIVTEHEYVE CTSSAIQTLL LFKKLYPNHR RKEVDNFIEK ATGYVENVQR
601: PDGSWYGGWG ICFTYAAWFA LSGLAAVGKT YSNSKTVRKG VDFLLSKQKA NGGWGGSYLS CPDMLYVHLE GDHTNLVQTA WCLMGLIEAG QVERDPTPLH
701: NAAKLLINSQ LDNGDFPQQE ILTMILVGYF LLCIWMHLNL EIMITGNHWS LHE

Best Arabidopsis Sequence Match ( AT1G78950.1 )
(BLAST)

001: MWRLKIGEGN GDDPYLFTTN NFAGRQTWEF DPDGGSPEER HSVVEARRIF YDNRFHVKAS SDLLWRMQFL REKKFEQRIA PVKVEDSEKV TFETATSALR
101: RGIHFFSALQ ASDGHWPAEN AGPLFFLPPL VFCLYITGHL DEVFTSEHRK EILRYIYCHQ KEDGGWGLHI EGHSTMFCTT LNYICMRILG ESPDGGHDNA
201: CGRAREWILS HGGVTYIPSW GKTWLSILGV FDWSGSNPMP PEFWILPSFF PVHPAKMWSY CRMVYLPMSY LYGKRFVGPI TSLILQLRKE LYLQPYEEIN
301: WMKVRHLCAK EDTYYPRPLV QELVWDSLYI FAEPFLARWP FNKLLREKAL QLAMKHIHYE DENSRYITIG CVEKVLCMLA CWVEDPNGDY FKKHLSRISD
401: YLWMAEDGMK MQSFGSQLWD TGFAMQALLA SNLSSEISDV LRRGHEFIKN SQVGENPSGD YKSMYRHISK GAWTFSDRDH GWQVSDCTAH GLKCCLLFSM
501: LAPDIVGPKQ DPERLHDSVN ILLSLQSKNG GMTAWEPAGA PKWLELLNPT EMFSDIVIEH EYSECTSSAI QALSLFKQLY PDHRTTEITA FIKKAAEYLE
601: NMQTRDGSWY GNWGICFTYG TWFALAGLAA AGKTFNDCEA IRKGVQFLLA AQKDNGGWGE SYLSCSKKIY IAQVGEISNV VQTAWALMGL IHSGQAERDP
701: IPLHRAAKLI INSQLESGDF PQQQATGVFL KNCTLHYAAY RNIHPLWALA EYRARVSLP

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.