Factsheet for VIT_10s0003g03540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 2
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g03610.t01	Wine grape	cytosol	85.2	67.38
VIT_10s0003g03560.t01	Wine grape	cytosol, peroxisome, plastid	76.23	61.82
VIT_10s0116g01070.t01	Wine grape	cytosol, endoplasmic reticulum, plastid	31.84	43.03
VIT_10s0003g03590.t01	Wine grape	cytosol, mitochondrion	21.52	42.48
VIT_09s0054g01290.t01	Wine grape	cytosol	23.32	40.31
VIT_00s0208g00080.t01	Wine grape	cytosol, endoplasmic reticulum, golgi	9.87	34.38
VIT_09s0054g01130.t01	Wine grape	cytosol	28.7	34.22
VIT_04s0008g03000.t01	Wine grape	cytosol	39.01	28.34
VIT_09s0054g01480.t01	Wine grape	cytosol	51.57	27.38
VIT_10s0003g03600.t01	Wine grape	cytosol, nucleus, plasma membrane	34.98	26.44
VIT_10s0003g03530.t01	Wine grape	cytosol	80.27	24.66
VIT_10s0003g03520.t01	Wine grape	cytosol	79.82	23.64
VIT_10s0003g03650.t01	Wine grape	cytosol	78.92	23.19
VIT_10s0003g03660.t01	Wine grape	cytosol	81.61	23.01
VIT_09s0054g01370.t01	Wine grape	cytosol	13.0	21.64
VIT_09s0054g01500.t01	Wine grape	cytosol	8.52	19.0
VIT_09s0054g01220.t01	Wine grape	cytosol	52.47	15.46
VIT_11s0065g00030.t01	Wine grape	cytosol	52.47	15.44
VIT_09s0054g01390.t01	Wine grape	cytosol	51.12	14.86
VIT_09s0054g01410.t01	Wine grape	cytosol	50.67	14.69
VIT_09s0054g01210.t01	Wine grape	cytosol	49.33	14.53
VIT_09s0054g01180.t01	Wine grape	cytosol	40.81	14.15
VIT_09s0054g01230.t01	Wine grape	cytosol	47.98	13.91
VIT_09s0018g00630.t01	Wine grape	cytosol	45.74	13.46
VIT_09s0054g01550.t01	Wine grape	cytosol	44.84	13.19
VIT_11s0065g00640.t01	Wine grape	cytosol	44.84	13.16
VIT_09s0054g01520.t01	Wine grape	cytosol	51.12	13.12
VIT_10s0003g03550.t01	Wine grape	extracellular	5.83	13.0
VIT_09s0054g01120.t01	Wine grape	cytosol	41.26	12.92
VIT_09s0054g01110.t01	Wine grape	cytosol	45.29	12.69
Zm00001d024337_P001	Maize	cytosol	38.56	11.89
HORVU7Hr1G000400.1	Barley	cytosol, plastid	39.01	11.8
EES13537	Sorghum	cytosol	39.46	11.55
TraesCS4A01G495100.1	Wheat	cytosol	38.56	11.36
TraesCS7D01G004000.1	Wheat	cytosol	38.56	11.33
TraesCS7A01G003500.1	Wheat	cytosol	38.12	11.2
Os08t0223900-00	Rice	cytosol	39.01	11.08
VIT_09s0054g01250.t01	Wine grape	cytosol	14.35	10.77
VIT_09s0054g01090.t01	Wine grape	cytosol	45.29	10.64
VIT_11s0065g00050.t01	Wine grape	cytosol, golgi, nucleus	1.35	4.48
VIT_09s0054g01360.t01	Wine grape	cytosol, golgi, mitochondrion, plastid	8.52	3.71
VIT_10s0003g03570.t01	Wine grape	cytosol	2.24	3.47
VIT_16s0115g00510.t01	Wine grape	cytosol, extracellular, plastid	0.9	2.94
VIT_09s0054g01340.t01	Wine grape	cytosol	4.93	2.66
VIT_09s0054g01280.t01	Wine grape	cytosol	3.59	2.25
CDY20917	Canola	cytosol	3.59	1.95
VIT_10s0116g01060.t01	Wine grape	cytosol	0.45	1.12
VIT_09s0054g01140.t01	Wine grape	extracellular	0.9	1.01
VIT_09s0054g01420.t01	Wine grape	cytosol, extracellular, golgi	0.45	0.92
VIT_04s0008g02980.t01	Wine grape	mitochondrion	0.45	0.64
VIT_09s0054g01470.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01330.t01	Wine grape	cytosol, mitochondrion, peroxisome	0.0	0.0
VIT_09s0054g01200.t01	Wine grape	cytosol	0.0	0.0
VIT_10s0116g01050.t01	Wine grape	cytosol, nucleus, peroxisome	0.0	0.0
VIT_09s0054g01170.t01	Wine grape	cytosol	0.0	0.0
VIT_09s0054g01160.t01	Wine grape	extracellular	0.0	0.0
VIT_04s0008g02990.t01	Wine grape	cytosol	0.0	0.0
CDY34478	Canola	cytosol, extracellular	0.0	0.0

Protein Annotations

ArrayExpress:VIT_10s0003g03540	EMBL:FN595992	EnsemblPlants:VIT_10s0003g03540.t01	EnsemblPlantsGene:VIT_10s0003g03540	Gene3D:1.50.10.20	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:SQ_cyclase_N	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16
PFAM:PF13249	ProteinID:CBI30892	ProteinID:CBI30892.3	SUPFAM:SSF48239	TMHMM:TMhelix	UniParc:UPI0001BE349C
UniProt:D7TK70	MapMan:9.1.4.3	:	:	:	:

Description

No Description!

Coordinates

chr10:+:5978699..5979856

Molecular Weight (calculated)

25324.1 Da

IEP (calculated)

8.445

GRAVY (calculated)

0.117

Length

223 amino acids

Sequence
(BLAST)

001: MIQEKNLIKE NQIDLSIPPV RLGEKEEVTY EAVITAVRKV VRLNRAIQAK DGHWPAKNAG PLFFAPPLIM VLYLIGTLNI ALTPKHIVLE LLRYITNHQN
101: EDGGWGFHIE GYSTMLGTTL SYISMRILGV GPDDKALAAG RKWILDCGGA TYSPSWGKCY LLVFGLYEWS GCNPLPPKFW LFPSFLPMHL GKQYAVPVYL
201: FTCLCRIYTT QDFSHPLLIW FYN

Best Arabidopsis Sequence Match ( AT1G78950.1 )
(BLAST)

001: MWRLKIGEGN GDDPYLFTTN NFAGRQTWEF DPDGGSPEER HSVVEARRIF YDNRFHVKAS SDLLWRMQFL REKKFEQRIA PVKVEDSEKV TFETATSALR
101: RGIHFFSALQ ASDGHWPAEN AGPLFFLPPL VFCLYITGHL DEVFTSEHRK EILRYIYCHQ KEDGGWGLHI EGHSTMFCTT LNYICMRILG ESPDGGHDNA
201: CGRAREWILS HGGVTYIPSW GKTWLSILGV FDWSGSNPMP PEFWILPSFF PVHPAKMWSY CRMVYLPMSY LYGKRFVGPI TSLILQLRKE LYLQPYEEIN
301: WMKVRHLCAK EDTYYPRPLV QELVWDSLYI FAEPFLARWP FNKLLREKAL QLAMKHIHYE DENSRYITIG CVEKVLCMLA CWVEDPNGDY FKKHLSRISD
401: YLWMAEDGMK MQSFGSQLWD TGFAMQALLA SNLSSEISDV LRRGHEFIKN SQVGENPSGD YKSMYRHISK GAWTFSDRDH GWQVSDCTAH GLKCCLLFSM
501: LAPDIVGPKQ DPERLHDSVN ILLSLQSKNG GMTAWEPAGA PKWLELLNPT EMFSDIVIEH EYSECTSSAI QALSLFKQLY PDHRTTEITA FIKKAAEYLE
601: NMQTRDGSWY GNWGICFTYG TWFALAGLAA AGKTFNDCEA IRKGVQFLLA AQKDNGGWGE SYLSCSKKIY IAQVGEISNV VQTAWALMGL IHSGQAERDP
701: IPLHRAAKLI INSQLESGDF PQQQATGVFL KNCTLHYAAY RNIHPLWALA EYRARVSLP

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.