CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20917	Canola	cytosol	53.08	48.29
CDY72111	Canola	cytosol	42.63	38.59
CDY08878	Canola	cytosol	15.28	30.81
CDX85103	Canola	cytosol	7.24	25.47
CDX79277	Canola	cytosol	46.38	25.18
CDX88494	Canola	endoplasmic reticulum, plasma membrane	47.99	23.07
CDX87419	Canola	cytosol	47.19	23.01
CDY57947	Canola	cytosol	46.38	22.56
CDX87420	Canola	cytosol	44.77	21.74
CDY63677	Canola	cytosol	5.36	21.05
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	28.42	20.99
CDX88493	Canola	cytosol	43.7	20.95
CDY35103	Canola	mitochondrion	43.43	20.56
CDY25386	Canola	cytosol, plasma membrane, plastid	32.17	20.48
VIT_10s0003g03650.t01	Wine grape	cytosol	37.0	18.18
VIT_10s0003g03520.t01	Wine grape	cytosol	35.92	17.8
CDY49432	Canola	cytosol	34.58	17.74
CDY52589	Canola	cytosol	34.58	17.74
VIT_10s0003g03660.t01	Wine grape	cytosol	36.19	17.07
TraesCS4A01G495100.1	Wheat	cytosol	34.58	17.04
HORVU7Hr1G000400.1	Barley	cytosol, plastid	33.51	16.96
CDX93093	Canola	cytosol	34.58	16.8
Zm00001d024337_P001	Maize	cytosol	32.44	16.74
TraesCS7A01G003500.1	Wheat	cytosol	34.05	16.73
VIT_10s0003g03530.t01	Wine grape	cytosol	32.44	16.67
TraesCS7D01G004000.1	Wheat	cytosol	33.78	16.6
CDY50938	Canola	cytosol	33.78	16.51
CDY38925	Canola	cytosol, nucleus, plasma membrane	32.44	16.44
CDX85104	Canola	cytosol	32.71	15.97
CDY25392	Canola	cytosol	32.44	15.9
EES13537	Sorghum	cytosol	32.44	15.88
CDY29797	Canola	cytosol	32.17	15.77
CDX77512	Canola	cytosol	32.71	15.7
Os08t0223900-00	Rice	cytosol	32.44	15.41
VIT_10s0003g03570.t01	Wine grape	cytosol	4.56	11.81
VIT_10s0003g03600.t01	Wine grape	cytosol, nucleus, plasma membrane	6.17	7.8
CDX89541	Canola	cytosol	1.88	4.76
CDY40048	Canola	cytosol	0.8	3.7
CDY29789	Canola	cytosol	0.54	2.04
CDY20916	Canola	cytosol	1.07	1.58
VIT_10s0003g03560.t01	Wine grape	cytosol, peroxisome, plastid	0.27	0.36
VIT_10s0003g03590.t01	Wine grape	cytosol, mitochondrion	0.0	0.0
VIT_10s0003g03610.t01	Wine grape	cytosol	0.0	0.0
VIT_10s0003g03540.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY34478	EnsemblPlantsGene:GSBRNA2T00056839001	Gene3D:1.50.10.20	GO:A0A078HCH8	GO:GO:0003674	GO:GO:0003824
GO:GO:0016866	InterPro:SQ_cyclase_C	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16
PFAM:PF13243	ProteinID:CDY34478	ProteinID:CDY34478.1	ScanProsite:PS01074	SUPFAM:SSF48239	UniParc:UPI0004EE1F78
UniProt:A0A078HCH8	MapMan:9.1.4.3	:	:	:	:

Description

BnaC04g13210DBnaC04g13210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCH8]

Coordinates

chrLK032335:-:30668..33142

Molecular Weight (calculated)

42279.2 Da

IEP (calculated)

8.113

GRAVY (calculated)

-0.142

Length

373 amino acids

Sequence
(BLAST)

001: MQSFGSQLWD TVFAVQALLA SDLCDETYEV LRRGHKYIKI SQNPSGDFKS MYCTAEALKC CMLLSTMPAD VTGQKIDPEH LFDSVNLLLS LHREYVECTS
101: SIIQAFVMFK QLYPDYMTKE FTKSIEIAVQ FIESKQMLDG SWCGNWGICF IYGTWFALSR LAAIDKTYNN CLSTRRGIDF LLSVQNEDGG WGKSYLSCPE
201: QRYIPLEGGG SNLVQTSCAM VGLIHAGQAK RDVMPLHNAA KFIIRNSRSI HEYMHATLCY IPKHLPIMGV GVENGCDVQI PEEENRPASI PLGRYVATEL
301: EPKLARAEVR LLRSDQALFQ NIDTTLVHAF SSTLRCYLPK TVASPFHVPR YSKLSIKLYR KNRGEFVLYR KKP

Best Arabidopsis Sequence Match ( AT1G78960.1 )
(BLAST)

001: MWKLKIGEGN GEDPYLFSSN NFVGRQTWEF DPKAGTPEER AAVEDARRNY LDNRPRVKGC SDLLWRMQFL KEAKFEQVIP PVKIDDGEGI TYKNATDALR
101: RAVSFYSALQ SSDGHWPAEI TGTLFFLPPL VFCFYITGHL EKIFDAEHRK EMLRHIYCHQ NEDGGWGLHI EGKSVMFCTV LNYICLRMLG EGPNGGRNNA
201: CKRARQWILD HGGVTYIPSW GKIWLSILGI YDWSGTNPMP PEIWLLPSFF PIHLGKTLCY TRMVYMPMSY LYGKRFVGPL TPLIMLLRKE LHLQPYEEIN
301: WNKARRLCAK EDMIYPHPLV QDLLWDTLHN FVEPILTNWP LKKLVREKAL RVAMEHIHYE DENSHYITIG CVEKVLCMLA CWIENPNGDH FKKHLARIPD
401: FMWVAEDGLK MQSFGSQLWD TVFAIQALLA CDLSDETDDV LRKGHSFIKK SQVRENPSGD FKSMYRHISK GAWTLSDRDH GWQVSDCTAE ALKCCMLLSM
501: MPAEVVGQKI DPEQLYDSVN LLLSLQGEKG GLTAWEPVRA QEWLELLNPT DFFTCVMAER EYVECTSAVI QALVLFKQLY PDHRTKEIIK SIEKGVQFIE
601: SKQTPDGSWH GNWGICFIYA TWFALSGLAA AGKTYKSCLA VRKGVDFLLA IQEEDGGWGE SHLSCPEQRY IPLEGNRSNL VQTAWAMMGL IHAGQAERDP
701: TPLHRAAKLI ITSQLENGDF PQQEILGVFM NTCMLHYATY RNIFPLWALA EYRKAAFATH QDL

Arabidopsis Description

LUP2Amyrin synthase LUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.