CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum, plastid

Predictor Summary:

cytosol 1
plastid 2
endoplasmic reticulum 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38925	Canola	cytosol, nucleus, plasma membrane	91.29	62.64
CDY25386	Canola	cytosol, plasma membrane, plastid	71.49	61.6
AT3G29255.1	Thale cress	cytosol	76.04	54.39
CDY49432	Canola	cytosol	76.24	52.96
CDY52589	Canola	cytosol	76.04	52.82
AT5G36150.1	Thale cress	cytosol	78.22	51.97
CDY25392	Canola	cytosol	72.67	48.23
CDY29797	Canola	cytosol	71.49	47.44
KRH10719	Soybean	cytosol	42.77	47.37
CDY72111	Canola	cytosol	36.83	45.15
KRH66676	Soybean	cytosol	53.66	43.02
CDX79277	Canola	cytosol	52.28	38.43
CDY20917	Canola	cytosol	31.09	38.29
KRH11342	Soybean	cytosol	51.09	37.07
KRH46975	Soybean	endoplasmic reticulum	55.45	36.75
KRH44692	Soybean	endoplasmic reticulum	54.85	36.35
VIT_09s0054g01210.t01	Wine grape	cytosol	54.26	36.2
KRH66671	Soybean	cytosol	53.86	35.7
CDX87420	Canola	cytosol	54.06	35.55
CDX87419	Canola	cytosol	53.66	35.42
CDX88493	Canola	cytosol	54.06	35.09
CDY57947	Canola	cytosol	52.48	34.55
CDX88494	Canola	endoplasmic reticulum, plasma membrane	52.87	34.41
CDY35103	Canola	mitochondrion	52.67	33.76
HORVU7Hr1G000400.1	Barley	cytosol, plastid	47.92	32.84
TraesCS7A01G003500.1	Wheat	cytosol	47.33	31.49
CDY50938	Canola	cytosol	47.52	31.45
TraesCS7D01G004000.1	Wheat	cytosol	47.13	31.36
EES13537	Sorghum	cytosol	47.13	31.23
TraesCS4A01G495100.1	Wheat	cytosol	46.73	31.18
CDX93093	Canola	cytosol	47.33	31.12
CDX85104	Canola	cytosol	46.53	30.76
CDX77512	Canola	cytosol	46.73	30.37
Os08t0223900-00	Rice	cytosol	46.34	29.81
Zm00001d024337_P001	Maize	cytosol	41.98	29.32
CDY34478	Canola	cytosol, extracellular	20.99	28.42
CDX85103	Canola	cytosol	5.74	27.36
CDY08878	Canola	cytosol	9.7	26.49
CDY63677	Canola	cytosol	4.55	24.21
CDY40048	Canola	cytosol	3.56	22.22
CDY20916	Canola	cytosol	10.69	21.34
CDX89541	Canola	cytosol	1.78	6.12
CDY29789	Canola	cytosol	0.99	5.1
KRH66677	Soybean	cytosol	0.4	1.47

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	GO:A0A078DK55	EnsemblPlants:CDX89540	ProteinID:CDX89540	ProteinID:CDX89540.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0016866	EnsemblPlantsGene:GSBRNA2T00149848001	PFAM:PF13243	PFAM:PF13249
PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	SUPFAM:SSF48239	InterPro:Squalene_cyclase
TIGRFAMs:TIGR01787	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0004EE3774	:	:	:

Description

BnaC04g35590D

Coordinates

chrLK031859:-:971113..974340

Molecular Weight (calculated)

58669.5 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.241

Length

505 amino acids

Sequence
(BLAST)

001: MARKWILDHG GATYTPLLGK AWLSVLGVYH WSGCKPIPPE FWLLPYSSPI NGGTVWIYLR DVFMGLSYLY SKKFVATPTP LILQVREEFY DQPYEEICWS
101: QARNLCAKED LYFPQSFVQD WFWNIVHMFS ENIFNLWPFN KLIRHKALQK TMEIIHYHDE ATQYITGGAI PKPFHMLACW VEDPKSDYFK KHLARVPGFL
201: WIGEDGLKIQ TFGSQIWDTA FLLQVMLAAD VNDEIRSTLI KGYSYLRKSQ ITENPPDKDQ GLHVSDCISE SLKCCLIFES MPSEFTGEKM DVERLYDAIN
301: MLLYLQGNNG GMAIWEPAPG KTWLEWLNPV EFVEESTVEH EFLECTGSAI VALLQFMKQF PDHRREEIEG FVTKGVKYIE DLQMPNGSWY GNWGVCFIYG
401: TFFAVRGLVA AGKTYHNCET IRRAVRFLIE TQNIEGGWGE SYLSCPRKKY TPLDGNKTNV LDNGDFPQQE MRGAYKMNLL LHYPTYRNMF TLWALTYYTK
501: ALRRT

Best Arabidopsis Sequence Match ( AT1G78500.1 )
(BLAST)

001: MWRLKIGAKG GDETHLFTTN NYTGRQTWEF DADACSPEEL AEVDEARQNF SINRSRFKIS ADLLWRMQFL REKKFEQKIP RVEIGDAENI TYKDAKTALR
101: RGILYFKALQ AEDGHWPAEN SGCLFFEAPF VICLYITGHL EKILTLEHRK ELLRYMYNHQ NEDGGWGIHV EGQSAMFCTV INYICLRILG VEADLDDIKG
201: SGCARARKWI LDHGGATYTP LIGKAWLSIL GVYDWSGCKP IPPEVWMLPT FSPFNGGTLW IYFRDIFMGV SYLYGKKFVA TPTPLILQLR EELYPQPYDK
301: ILWSQARNQC AKEDLYYPQS FLQEMFWKCV HILSENILNR WPCNKLIRQK ALRTTMELLH YQDEASRYFT GGCVPKPFHM LACWVEDPDG DYFKKHLARV
401: PDYIWIGEDG LKIQSFGSQL WDTAFSLQVM LAYQDVDDDD DEIRSTLIKG YSFLNKSQLT QNPPGDHRKM LKDIAKGGWT FSDQDQGWPV SDCTAESLEC
501: CLVFGSMPSE LIGEKMDVER LYDAVNLLLY FQSKNGGITV WEAARGRTWL EWLSPVEFME DTIVEHEYVE CTGSAIVALA RFLKEFPEHR REEVEKFIKN
601: AVKYIESFQM PDGSWYGNWG VCFMYGTFFA VRGLVAAGKT YQNCEPIRKA VQFILETQNV EGGWGESYLS CPNKKYTLLE GNRTNVVNTG QALMVLIMGG
701: QMERDPLPVH RAAKVLINSQ LDNGDFPQEE IMGVFKMNVM VHYATYRNIF TLWALTYYTK ALRVPLC

Arabidopsis Description

PEN6Seco-amyrin synthase [Source:UniProtKB/Swiss-Prot;Acc:Q9SYN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.