Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89540 | Canola | endoplasmic reticulum, golgi, plastid | 54.39 | 76.04 |
| AT5G36150.1 | Thale cress | cytosol | 81.73 | 75.92 |
| Bra032185.1-P | Field mustard | cytosol, plasma membrane, plastid | 75.92 | 70.53 |
| CDY38925 | Canola | cytosol, nucleus, plasma membrane | 72.8 | 69.84 |
| AT4G15370.1 | Thale cress | cytosol | 72.95 | 67.85 |
| AT1G78500.2 | Thale cress | cytosol | 73.51 | 67.67 |
| AT4G15340.1 | Thale cress | mitochondrion | 72.24 | 66.58 |
| AT5G42600.1 | Thale cress | cytosol | 69.55 | 64.52 |
| AT5G48010.2 | Thale cress | cytosol | 69.69 | 64.23 |
| KRH10719 | Soybean | cytosol | 33.71 | 52.19 |
| AT1G78960.2 | Thale cress | cytosol | 55.24 | 51.11 |
| KRH66676 | Soybean | cytosol | 45.47 | 50.95 |
| VIT_09s0054g01210.t01 | Wine grape | cytosol | 54.11 | 50.46 |
| KRH46975 | Soybean | endoplasmic reticulum | 53.97 | 50.0 |
| AT1G78950.2 | Thale cress | cytosol, plasma membrane, plastid | 54.25 | 49.87 |
| KRH44692 | Soybean | endoplasmic reticulum | 53.4 | 49.48 |
| AT1G78955.1 | Thale cress | cytosol | 53.82 | 49.41 |
| AT1G78970.1 | Thale cress | cytosol | 52.27 | 48.74 |
| KRH66671 | Soybean | cytosol | 52.41 | 48.56 |
| AT1G66960.2 | Thale cress | mitochondrion | 50.57 | 46.24 |
| KRH11342 | Soybean | cytosol | 45.47 | 46.12 |
| AT2G07050.1 | Thale cress | cytosol | 48.16 | 44.8 |
| TraesCS4A01G495100.1 | Wheat | cytosol | 44.33 | 41.35 |
| EES13537 | Sorghum | cytosol | 44.62 | 41.34 |
| TraesCS7D01G004000.1 | Wheat | cytosol | 44.33 | 41.24 |
| AT3G45130.2 | Thale cress | cytosol | 44.33 | 40.97 |
| TraesCS7A01G003500.1 | Wheat | cytosol | 43.91 | 40.84 |
| Zm00001d024337_P001 | Maize | cytosol | 41.78 | 40.8 |
| HORVU7Hr1G000400.1 | Barley | cytosol, plastid | 41.93 | 40.16 |
| Os08t0223900-00 | Rice | cytosol | 44.05 | 39.62 |
| KRH66677 | Soybean | cytosol | 7.22 | 37.5 |
| AT1G78480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 6.37 | 22.28 |
Protein Annotations
| Gene3D:1.50.10.20 | MapMan:9.1.4.3 | ArrayExpress:AT3G29255 | EnsemblPlantsGene:AT3G29255 | RefSeq:AT3G29255 | TAIR:AT3G29255 |
| RefSeq:AT3G29255-TAIR-G | EnsemblPlants:AT3G29255.1 | TAIR:AT3G29255.1 | Unigene:At.74662 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016853 | GO:GO:0016866 | PFAM:PF13243 | PFAM:PF13249 | ScanProsite:PS01074 | PANTHER:PTHR11764 |
| PANTHER:PTHR11764:SF16 | InterPro:SQ_cyclase_C | InterPro:SQ_cyclase_N | SUPFAM:SSF48239 | InterPro:Squalene_cyclase | TIGRFAMs:TIGR01787 |
| InterPro:Terpene_synthase_CS | InterPro:Terpenoid_cyclase/PrenylTrfase | UniParc:UPI0001A7B2BC | : | : | : |
Description
catalytics;intramolecular transferases [Source:TAIR;Acc:AT3G29255]
Coordinates
chr3:+:11209586..11213909
Molecular Weight (calculated)
81374.7 Da
IEP (calculated)
7.446
GRAVY (calculated)
-0.279
Length
706 amino acids
Sequence
(BLAST)
(BLAST)
001: IDNKKWKLRI GAKAGDDPHL CTTNNYLGRQ IWEFDTNACS PEELFEVEKA RRNFSDNRSQ YKASADLLWL SKGEKVQTKH SAALQSDDGH WPAENSGCMF
101: FNAPFNDDGG WGLDVESHSS MFCTVLNYIC LRIMEVDPDH DRKKSACARA RKWIIDRGGA TYTPLFGKAC LSVLGVYEWS GCKPIPPEFW LFPSYFPING
201: GTVWIYFRDT FMALSYLYGK KFVATPTPLI LQLRQELYPQ TYADIVWSQA RNRCAKEDLY YPQTFVQDLF WKSVHMFSEN ILNRWPFKKL IRERAIRRAL
301: ELIHYHDEAT QYITGGGVPK VFHMLACWAE GPESGYFKKH LARVSGFIWI SEDGLKIQSF GSQIWDTVLL LKVMLAADID DEIRSMLIKG YSFLRKSQLI
401: ENPPGYYIKM FRDISKGGWG FSDKDQGWPA SDCTSESLEC CLIFESMPSN FIDEKMDVER LYDAVNMLLY LQSENGGKAV WERASGKKWL EWLSPIEFME
501: ETILEHEYVE CTGSAVVVLT RFMKQFPRHR TKEIETFIAK AVKYIESLQM ADGSWYGNWG VCFIYATFFA VRGLVAAGKT YQSYEPIRRA VQFLLKIQND
601: EGGWGESFLS CPGKKYISLE GNKTNVVNTG QAMMVLIMSG QMERDPLPVH RAAKVLINSQ MENGDFPQQE LRGVYKMNVL LHYPTYRNIF SLWALTYYTK
701: ALRLLL
101: FNAPFNDDGG WGLDVESHSS MFCTVLNYIC LRIMEVDPDH DRKKSACARA RKWIIDRGGA TYTPLFGKAC LSVLGVYEWS GCKPIPPEFW LFPSYFPING
201: GTVWIYFRDT FMALSYLYGK KFVATPTPLI LQLRQELYPQ TYADIVWSQA RNRCAKEDLY YPQTFVQDLF WKSVHMFSEN ILNRWPFKKL IRERAIRRAL
301: ELIHYHDEAT QYITGGGVPK VFHMLACWAE GPESGYFKKH LARVSGFIWI SEDGLKIQSF GSQIWDTVLL LKVMLAADID DEIRSMLIKG YSFLRKSQLI
401: ENPPGYYIKM FRDISKGGWG FSDKDQGWPA SDCTSESLEC CLIFESMPSN FIDEKMDVER LYDAVNMLLY LQSENGGKAV WERASGKKWL EWLSPIEFME
501: ETILEHEYVE CTGSAVVVLT RFMKQFPRHR TKEIETFIAK AVKYIESLQM ADGSWYGNWG VCFIYATFFA VRGLVAAGKT YQSYEPIRRA VQFLLKIQND
601: EGGWGESFLS CPGKKYISLE GNKTNVVNTG QAMMVLIMSG QMERDPLPVH RAAKVLINSQ MENGDFPQQE LRGVYKMNVL LHYPTYRNIF SLWALTYYTK
701: ALRLLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.