Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G15370.1 | Thale cress | cytosol | 78.88 | 79.71 |
| AT4G15340.1 | Thale cress | mitochondrion | 76.66 | 76.76 |
| AT5G36150.1 | Thale cress | cytosol | 75.62 | 76.32 |
| AT5G48010.2 | Thale cress | cytosol | 74.19 | 74.28 |
| AT5G42600.1 | Thale cress | cytosol | 73.27 | 73.85 |
| AT3G29255.1 | Thale cress | cytosol | 67.67 | 73.51 |
| KRH46975 | Soybean | endoplasmic reticulum | 59.19 | 59.58 |
| VIT_09s0054g01210.t01 | Wine grape | cytosol | 58.41 | 59.18 |
| KRH44692 | Soybean | endoplasmic reticulum | 58.67 | 59.06 |
| AT1G78955.1 | Thale cress | cytosol | 58.8 | 58.65 |
| AT1G78950.2 | Thale cress | cytosol, plasma membrane, plastid | 58.15 | 58.07 |
| KRH66671 | Soybean | cytosol | 57.5 | 57.87 |
| AT1G78960.2 | Thale cress | cytosol | 57.5 | 57.8 |
| AT1G78970.1 | Thale cress | cytosol | 56.58 | 57.33 |
| KRH66676 | Soybean | cytosol | 47.07 | 57.3 |
| KRH10719 | Soybean | cytosol | 32.72 | 55.04 |
| KRH11342 | Soybean | cytosol | 49.93 | 55.03 |
| AT1G66960.2 | Thale cress | mitochondrion | 53.98 | 53.63 |
| KRH66677 | Soybean | cytosol | 9.39 | 52.94 |
| AT2G07050.1 | Thale cress | cytosol | 48.63 | 49.14 |
| TraesCS7D01G004000.1 | Wheat | cytosol | 47.98 | 48.48 |
| TraesCS4A01G495100.1 | Wheat | cytosol | 47.72 | 48.35 |
| TraesCS7A01G003500.1 | Wheat | cytosol | 47.72 | 48.22 |
| EES13537 | Sorghum | cytosol | 47.46 | 47.77 |
| HORVU7Hr1G000400.1 | Barley | cytosol, plastid | 44.98 | 46.81 |
| AT3G45130.2 | Thale cress | cytosol | 45.89 | 46.07 |
| Zm00001d024337_P001 | Maize | cytosol | 43.42 | 46.06 |
| Os08t0223900-00 | Rice | cytosol | 46.28 | 45.22 |
| AT1G78480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 8.6 | 32.67 |
Protein Annotations
| Gene3D:1.50.10.20 | EntrezGene:844186 | MapMan:9.1.4.3 | ProteinID:AAD30585.1 | EMBL:AB274959 | ProteinID:AEE36113.1 |
| ProteinID:ANM60176.1 | ArrayExpress:AT1G78500 | EnsemblPlantsGene:AT1G78500 | RefSeq:AT1G78500 | TAIR:AT1G78500 | RefSeq:AT1G78500-TAIR-G |
| EnsemblPlants:AT1G78500.2 | Unigene:At.52557 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0016853 |
| GO:GO:0016866 | GO:GO:0031559 | GO:GO:0042299 | RefSeq:NP_001322480.1 | RefSeq:NP_177971.1 | PFAM:PF13243 |
| PFAM:PF13249 | ScanProsite:PS01074 | PANTHER:PTHR11764 | PANTHER:PTHR11764:SF16 | UniProt:Q9SYN1 | InterPro:SQ_cyclase_C |
| InterPro:SQ_cyclase_N | SUPFAM:SSF48239 | InterPro:Squalene_cyclase | TIGRFAMs:TIGR01787 | InterPro:Terpene_synthase_CS | InterPro:Terpenoid_cyclase/PrenylTrfase |
| UniParc:UPI00000A9FAA | : | : | : | : | : |
Description
PEN6Seco-amyrin synthase [Source:UniProtKB/Swiss-Prot;Acc:Q9SYN1]
Coordinates
chr1:+:29531467..29535204
Molecular Weight (calculated)
88452.0 Da
IEP (calculated)
5.679
GRAVY (calculated)
-0.279
Length
767 amino acids
Sequence
(BLAST)
(BLAST)
001: MWRLKIGAKG GDETHLFTTN NYTGRQTWEF DADACSPEEL AEVDEARQNF SINRSRFKIS ADLLWRMQFL REKKFEQKIP RVEIGDAENI TYKDAKTALR
101: RGILYFKALQ AEDGHWPAEN SGCLFFEAPF VICLYITGHL EKILTLEHRK ELLRYMYNHQ NEDGGWGIHV EGQSAMFCTV INYICLRILG VEADLDDIKG
201: SGCARARKWI LDHGGATYTP LIGKAWLSIL GVYDWSGCKP IPPEVWMLPT FSPFNGGTLW IYFRDIFMGV SYLYGKKFVA TPTPLILQLR EELYPQPYDK
301: ILWSQARNQC AKEDLYYPQS FLQEMFWKCV HILSENILNR WPCNKLIRQK ALRTTMELLH YQDEASRYFT GGCVPKPFHM LACWVEDPDG DYFKKHLARV
401: PDYIWIGEDG LKIQSFGSQL WDTAFSLQVM LAYQDVDDDD DEIRSTLIKG YSFLNKSQLT QNPPGDHRKM LKDIAKGGWT FSDQDQGWPV SDCTAESLEC
501: CLVFGSMPSE LIGEKMDVER LYDAVNLLLY FQSKNGGITV WEAARGRTWL EWLSPVEFME DTIVEHEYVE CTGSAIVALA RFLKEFPEHR REEVEKFIKN
601: AVKYIESFQM PDGSWYGNWG VCFMYGTFFA VRGLVAAGKT YQNCEPIRKA VQFILETQNV EGGWGESYLS CPNKKYTLLE GNRTNVVNTG QALMVLIMGG
701: QMERDPLPVH RAAKVLINSQ LDNGDFPQEE IMGVFKMNVM VHYATYRNIF TLWALTYYTK ALRVPLC
101: RGILYFKALQ AEDGHWPAEN SGCLFFEAPF VICLYITGHL EKILTLEHRK ELLRYMYNHQ NEDGGWGIHV EGQSAMFCTV INYICLRILG VEADLDDIKG
201: SGCARARKWI LDHGGATYTP LIGKAWLSIL GVYDWSGCKP IPPEVWMLPT FSPFNGGTLW IYFRDIFMGV SYLYGKKFVA TPTPLILQLR EELYPQPYDK
301: ILWSQARNQC AKEDLYYPQS FLQEMFWKCV HILSENILNR WPCNKLIRQK ALRTTMELLH YQDEASRYFT GGCVPKPFHM LACWVEDPDG DYFKKHLARV
401: PDYIWIGEDG LKIQSFGSQL WDTAFSLQVM LAYQDVDDDD DEIRSTLIKG YSFLNKSQLT QNPPGDHRKM LKDIAKGGWT FSDQDQGWPV SDCTAESLEC
501: CLVFGSMPSE LIGEKMDVER LYDAVNLLLY FQSKNGGITV WEAARGRTWL EWLSPVEFME DTIVEHEYVE CTGSAIVALA RFLKEFPEHR REEVEKFIKN
601: AVKYIESFQM PDGSWYGNWG VCFMYGTFFA VRGLVAAGKT YQNCEPIRKA VQFILETQNV EGGWGESYLS CPNKKYTLLE GNRTNVVNTG QALMVLIMGG
701: QMERDPLPVH RAAKVLINSQ LDNGDFPQEE IMGVFKMNVM VHYATYRNIF TLWALTYYTK ALRVPLC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.