Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 1
- cytosol 1
- plastid 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G78955.1 | Thale cress | cytosol | 76.95 | 76.85 |
| AT1G78970.1 | Thale cress | cytosol | 70.83 | 71.86 |
| AT1G78960.2 | Thale cress | cytosol | 70.7 | 71.17 |
| AT1G66960.2 | Thale cress | mitochondrion | 68.1 | 67.75 |
| Solyc12g035450.1.1 | Tomato | cytosol, plasma membrane, plastid | 14.06 | 62.79 |
| AT1G78500.2 | Thale cress | cytosol | 58.07 | 58.15 |
| AT2G07050.1 | Thale cress | cytosol | 57.03 | 57.71 |
| AT4G15340.1 | Thale cress | mitochondrion | 57.42 | 57.57 |
| AT5G36150.1 | Thale cress | cytosol | 56.64 | 57.24 |
| Solyc12g035460.1.1 | Tomato | cytosol | 16.67 | 56.89 |
| AT4G15370.1 | Thale cress | cytosol | 55.86 | 56.52 |
| AT5G48010.2 | Thale cress | cytosol | 56.12 | 56.27 |
| AT5G42600.1 | Thale cress | cytosol | 55.47 | 55.98 |
| AT3G29255.1 | Thale cress | cytosol | 49.87 | 54.25 |
| TraesCS4A01G495100.1 | Wheat | cytosol | 52.99 | 53.76 |
| AT3G45130.2 | Thale cress | cytosol | 52.47 | 52.75 |
| TraesCS7A01G003500.1 | Wheat | cytosol | 52.08 | 52.7 |
| TraesCS7D01G004000.1 | Wheat | cytosol | 52.08 | 52.7 |
| HORVU7Hr1G000400.1 | Barley | cytosol, plastid | 48.96 | 51.02 |
| EES13537 | Sorghum | cytosol | 50.52 | 50.92 |
| Os08t0223900-00 | Rice | cytosol | 50.78 | 49.68 |
| Zm00001d024337_P001 | Maize | cytosol | 46.74 | 49.65 |
| AT1G78480.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 10.03 | 38.12 |
Protein Annotations
| Gene3D:1.50.10.20 | EntrezGene:844234 | MapMan:9.1.4.3 | UniProt:A0A1P8AWZ1 | ProteinID:AAC17080.1 | EMBL:AB374428 |
| ProteinID:AEE36183.1 | ProteinID:ANM61188.1 | ArrayExpress:AT1G78950 | EnsemblPlantsGene:AT1G78950 | RefSeq:AT1G78950 | TAIR:AT1G78950 |
| RefSeq:AT1G78950-TAIR-G | EnsemblPlants:AT1G78950.2 | Unigene:At.34208 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0016853 |
| GO:GO:0016866 | GO:GO:0042300 | RefSeq:NP_001323419.1 | RefSeq:NP_178016.2 | ProteinID:OAP15858.1 | PFAM:PF13243 |
| PFAM:PF13249 | ScanProsite:PS01074 | PANTHER:PTHR11764 | PANTHER:PTHR11764:SF16 | InterPro:SQ_cyclase_C | InterPro:SQ_cyclase_N |
| SUPFAM:SSF48239 | InterPro:Squalene_cyclase | TIGRFAMs:TIGR01787 | InterPro:Terpene_synthase_CS | InterPro:Terpenoid_cyclase/PrenylTrfase | UniParc:UPI0008487B53 |
| SEG:seg | : | : | : | : | : |
Description
Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
Coordinates
chr1:-:29684236..29688800
Molecular Weight (calculated)
88075.3 Da
IEP (calculated)
6.807
GRAVY (calculated)
-0.267
Length
768 amino acids
Sequence
(BLAST)
(BLAST)
001: MRYVAHIFVM WRLKIGEGNG DDPYLFTTNN FAGRQTWEFD PDGGSPEERH SVVEARRIFY DNRFHVKASS DLLWRMQFLR EKKFEQRIAP VKVEDSEKVT
101: FETATSALRR GIHFFSALQA SDGHWPAENA GPLFFLPPLV FCLYITGHLD EVFTSEHRKE ILRYIYCHQK EDGGWGLHIE GHSTMFCTTL NYICMRILGE
201: SPDGGHDNAC GRAREWILSH GGVTYIPSWG KTWLSILGVF DWSGSNPMPP EFWILPSFFP VHPAKMWSYC RMVYLPMSYL YGKRFVGPIT SLILQLRKEL
301: YLQPYEEINW MKVRHLCAKE DTYYPRPLVQ ELVWDSLYIF AEPFLARWPF NKLLREKALQ LAMKHIHYED ENSRYITIGC VEKVLCMLAC WVEDPNGDYF
401: KKHLSRISDY LWMAEDGMKM QSFGSQLWDT GFAMQALLAS NLSSEISDVL RRGHEFIKNS QVGENPSGDY KSMYRHISKG AWTFSDRDHG WQVSDCTAHG
501: LKCCLLFSML APDIVGPKQD PERLHDSVNI LLSLQSKNGG MTAWEPAGAP KWLELLNPTE MFSDIVIEHE YSECTSSAIQ ALSLFKQLYP DHRTTEITAF
601: IKKAAEYLEN MQTRDGSWYG NWGICFTYGT WFALAGLAAA GKTFNDCEAI RKGVQFLLAA QKDNGGWGES YLSCSKKIYI AQVGEISNVV QTAWALMGLI
701: HSGQAERDPI PLHRAAKLII NSQLESGDFP QQQATGVFLK NCTLHYAAYR NIHPLWALAE YRARVSLP
101: FETATSALRR GIHFFSALQA SDGHWPAENA GPLFFLPPLV FCLYITGHLD EVFTSEHRKE ILRYIYCHQK EDGGWGLHIE GHSTMFCTTL NYICMRILGE
201: SPDGGHDNAC GRAREWILSH GGVTYIPSWG KTWLSILGVF DWSGSNPMPP EFWILPSFFP VHPAKMWSYC RMVYLPMSYL YGKRFVGPIT SLILQLRKEL
301: YLQPYEEINW MKVRHLCAKE DTYYPRPLVQ ELVWDSLYIF AEPFLARWPF NKLLREKALQ LAMKHIHYED ENSRYITIGC VEKVLCMLAC WVEDPNGDYF
401: KKHLSRISDY LWMAEDGMKM QSFGSQLWDT GFAMQALLAS NLSSEISDVL RRGHEFIKNS QVGENPSGDY KSMYRHISKG AWTFSDRDHG WQVSDCTAHG
501: LKCCLLFSML APDIVGPKQD PERLHDSVNI LLSLQSKNGG MTAWEPAGAP KWLELLNPTE MFSDIVIEHE YSECTSSAIQ ALSLFKQLYP DHRTTEITAF
601: IKKAAEYLEN MQTRDGSWYG NWGICFTYGT WFALAGLAAA GKTFNDCEAI RKGVQFLLAA QKDNGGWGES YLSCSKKIYI AQVGEISNVV QTAWALMGLI
701: HSGQAERDPI PLHRAAKLII NSQLESGDFP QQQATGVFLK NCTLHYAAYR NIHPLWALAE YRARVSLP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.