Factsheet for AT1G78480.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

endoplasmic reticulum 6
golgi 5
extracellular 6
plastid 1
vacuole 4
plasma membrane 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G78960.2	Thale cress	cytosol	40.59	10.75
AT1G66960.2	Thale cress	mitochondrion	40.59	10.62
AT1G78955.1	Thale cress	cytosol	39.6	10.4
AT1G78950.2	Thale cress	cytosol, plasma membrane, plastid	38.12	10.03
AT1G78970.1	Thale cress	cytosol	36.63	9.78
AT5G42600.1	Thale cress	cytosol	33.66	8.94
AT4G15370.1	Thale cress	cytosol	33.17	8.83
AT1G78500.2	Thale cress	cytosol	32.67	8.6
AT4G15340.1	Thale cress	mitochondrion	31.68	8.36
AT2G07050.1	Thale cress	cytosol	31.19	8.3
AT5G36150.1	Thale cress	cytosol	31.19	8.29
AT5G48010.2	Thale cress	cytosol	30.69	8.09
AT3G45130.2	Thale cress	cytosol	29.7	7.85
TraesCS4A01G495100.1	Wheat	cytosol	26.73	7.13
Zm00001d024337_P001	Maize	cytosol	25.25	7.05
TraesCS7A01G003500.1	Wheat	cytosol	26.24	6.98
TraesCS7D01G004000.1	Wheat	cytosol	25.74	6.85
EES13537	Sorghum	cytosol	25.74	6.82
Os08t0223900-00	Rice	cytosol	26.24	6.75
AT3G29255.1	Thale cress	cytosol	22.28	6.37
HORVU7Hr1G000400.1	Barley	cytosol, plastid	22.77	6.24
VIT_00s0208g00080.t01	Wine grape	cytosol, endoplasmic reticulum, golgi	0.0	0.0

Protein Annotations

Gene3D:1.50.10.20	MapMan:35.1	EntrezGene:844184	ProteinID:AAF71792.1	ProteinID:AEE36111.1	ArrayExpress:AT1G78480
EnsemblPlantsGene:AT1G78480	RefSeq:AT1G78480	TAIR:AT1G78480	RefSeq:AT1G78480-TAIR-G	EnsemblPlants:AT1G78480.1	TAIR:AT1G78480.1
Unigene:At.51313	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	RefSeq:NP_177969.1	PFAM:PF00432	InterPro:PFTB_repeat	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16
UniProt:Q9M9G0	SUPFAM:SSF48239	TMHMM:TMhelix	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00000484B0	SEG:seg

Description

F3F9.1 [Source:UniProtKB/TrEMBL;Acc:Q9M9G0]

Coordinates

chr1:-:29525501..29526363

Molecular Weight (calculated)

23497.4 Da

IEP (calculated)

5.299

GRAVY (calculated)

0.076

Length

202 amino acids

Sequence
(BLAST)

001: MGHVQLLTPC FYSFPFFSFF LLFFLFNAKN VFILISVDLT VGTVFELEAK VEQVIPPVKV EDGESTTHET RRMRYGEEFL SSRLCRPPMV TGLEKSLDLS
101: SSFLHWYVSS SFIGHLEEIF DAEHREEILR YIYRHLNDDG GWGLHVEGKS FMFCTALNYI CLRILREGPD EGREYACKLT SKMPWIVTFL LIYNNESCFP
201: SI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.