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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • cytosol 3
  • plastid 2
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, plasma membrane, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH44692 Soybean endoplasmic reticulum 95.93 95.93
KRH66671 Soybean cytosol 89.11 89.11
KRH66676 Soybean cytosol 71.0 85.87
KRH66677 Soybean cytosol 14.44 80.88
PGSC0003DMT400048796 Potato cytosol 78.74 78.84
KRH10719 Soybean cytosol 47.11 78.73
Solyc12g006530.1.1 Tomato cytosol 78.22 78.32
CDY40048 Canola cytosol 8.27 77.78
Solyc12g006520.1.1 Tomato cytosol 69.29 75.64
KRH11342 Soybean cytosol 68.9 75.43
PGSC0003DMT400043981 Potato cytosol 60.37 75.41
PGSC0003DMT400051584 Potato cytosol 75.2 75.3
PGSC0003DMT400048795 Potato cytosol 72.31 75.17
Solyc12g006510.1.1 Tomato cytosol 72.44 73.21
VIT_09s0054g01420.t01 Wine grape cytosol, extracellular, golgi 9.32 65.14
KRH38081 Soybean cytosol 6.17 63.51
KRG92127 Soybean cytosol 61.15 60.84
CDY49432 Canola cytosol 57.22 59.97
CDY52589 Canola cytosol 57.09 59.83
KRH41389 Soybean cytosol 59.84 59.76
KRH74134 Soybean endoplasmic reticulum 59.06 59.45
Bra039929.1-P Field mustard cytosol 56.69 59.42
AT1G78500.2 Thale cress cytosol 59.58 59.19
AT4G15340.1 Thale cress mitochondrion 58.01 57.7
CDY38925 Canola cytosol, nucleus, plasma membrane 55.64 57.61
AT5G36150.1 Thale cress cytosol 57.35 57.5
AT4G15370.1 Thale cress cytosol 57.09 57.31
Bra032185.1-P Field mustard cytosol, plasma membrane, plastid 56.96 57.11
AT5G48010.2 Thale cress cytosol 57.35 57.05
CDY29797 Canola cytosol 56.3 56.37
Bra035809.1-P Field mustard cytosol 42.91 55.9
CDY25392 Canola cytosol 55.64 55.72
CDY25386 Canola cytosol, plasma membrane, plastid 42.65 55.46
AT5G42600.1 Thale cress cytosol 55.38 55.45
CDX89540 Canola endoplasmic reticulum, golgi, plastid 36.75 55.45
TraesCS4A01G495100.1 Wheat cytosol 54.07 54.43
KRH74136 Soybean cytosol 54.33 53.98
AT3G29255.1 Thale cress cytosol 50.0 53.97
TraesCS7D01G004000.1 Wheat cytosol 52.89 53.1
TraesCS7A01G003500.1 Wheat cytosol 52.62 52.83
KRH13217 Soybean cytosol 42.91 52.4
Bra035810.1-P Field mustard cytosol, mitochondrion 9.58 52.14
EES13537 Sorghum cytosol 52.1 52.1
Solyc12g035440.1.1 Tomato cytosol 5.91 51.72
CDY08878 Canola cytosol 12.47 51.35
HORVU7Hr1G000400.1 Barley cytosol, plastid 49.61 51.29
Os08t0223900-00 Rice cytosol 52.36 50.83
Zm00001d024337_P001 Maize cytosol 48.03 50.62
CDX89541 Canola cytosol 9.06 46.94
CDY63677 Canola cytosol 4.72 37.89
Protein Annotations
Gene3D:1.50.10.20EntrezGene:547702MapMan:9.1.4.3UniProt:A0A0R0J895EMBL:ACUP02004132ncoils:Coil
EnsemblPlantsGene:GLYMA_07G001300GO:GO:0003674GO:GO:0003824GO:GO:0016853GO:GO:0016866EnsemblPlants:KRH46975
ProteinID:KRH46975ProteinID:KRH46975.1PFAM:PF13243PFAM:PF13249ScanProsite:PS01074PANTHER:PTHR11764
PANTHER:PTHR11764:SF16InterPro:SQ_cyclase_CInterPro:SQ_cyclase_NSUPFAM:SSF48239InterPro:Squalene_cyclaseTIGRFAMs:TIGR01787
InterPro:Terpene_synthase_CSInterPro:Terpenoid_cyclase/PrenylTrfaseUniParc:UPI00000493AF:::
Description
hypothetical protein
Coordinates
chr7:+:132866..141435
Molecular Weight (calculated)
87521.9 Da
IEP (calculated)
6.743
GRAVY (calculated)
-0.314
Length
762 amino acids
Sequence
(BLAST)
001: MWRLKIADGG NDPYIFSTNN FVGRQTWEFD PEAGSPEERA QVEAARQHFY HNRFKVKPCA DLLWRFQVLR ENNFKQTIPR VTIEDGEEIT YQKVTSAVRR
101: GAHHLAALQT SDGHWPAQIA GPLFFLPPLV FCMYITGNLE SVFPEEHRKE ILRYTYYHQN EDGGWGLHIE GHSTMFCTAL NYICMRMLGE GPNGGHDNAC
201: ARARKWIRDH GGVTHIPSWG KTWLSILGVF DWCGSNPMPP EFWILPSFLP MHPAKMWCYC RLVYMPMSYL YGKRFVGPIT PLILQLREEL FTQPYEKVNW
301: KKARHQCAKE DLYYPHPLIQ DLIWDSLYIF TEPLLTRWPF NKLIREKALQ VTMKHIHYED ETSRYITIGC VEKVLCMLAC WVEDPNGDAF KKHLARVPDY
401: LWVSEDGMTM QSFGSQEWDA GFAVQALLAT NIIEEIGPTF AKGHDFIKKS QVKDNPFGDF KSMHRHISKG SWTFSDQDHG WQVSDCTAEG LKCCLLLSML
501: PPEIVGEKME PERLYDSVNV LLSLQSKKGG LAAWEPAGAQ EWLELLNPTE FFADIVVEHE YVECTGSAIQ ALVLFKKLYP GHRKKEIENF ITNAVRFLED
601: TQTADGSWYG NWGVCFTYGS WFALGGLAAA GKTYTNCAAI RKAVKFLLTT QREDGGWGES YLSSPKKIYV PLEGSRSNVV HTAWALMGLI HAGQADRDPM
701: PLHRAAKLLI NSQLEEGDWP QQEITGVFMK NCMLHYPMYR DIYPMWALAE YRRRVPLPST EV
Best Arabidopsis Sequence Match ( AT1G78950.2 )
(BLAST)
001: MRYVAHIFVM WRLKIGEGNG DDPYLFTTNN FAGRQTWEFD PDGGSPEERH SVVEARRIFY DNRFHVKASS DLLWRMQFLR EKKFEQRIAP VKVEDSEKVT
101: FETATSALRR GIHFFSALQA SDGHWPAENA GPLFFLPPLV FCLYITGHLD EVFTSEHRKE ILRYIYCHQK EDGGWGLHIE GHSTMFCTTL NYICMRILGE
201: SPDGGHDNAC GRAREWILSH GGVTYIPSWG KTWLSILGVF DWSGSNPMPP EFWILPSFFP VHPAKMWSYC RMVYLPMSYL YGKRFVGPIT SLILQLRKEL
301: YLQPYEEINW MKVRHLCAKE DTYYPRPLVQ ELVWDSLYIF AEPFLARWPF NKLLREKALQ LAMKHIHYED ENSRYITIGC VEKVLCMLAC WVEDPNGDYF
401: KKHLSRISDY LWMAEDGMKM QSFGSQLWDT GFAMQALLAS NLSSEISDVL RRGHEFIKNS QVGENPSGDY KSMYRHISKG AWTFSDRDHG WQVSDCTAHG
501: LKCCLLFSML APDIVGPKQD PERLHDSVNI LLSLQSKNGG MTAWEPAGAP KWLELLNPTE MFSDIVIEHE YSECTSSAIQ ALSLFKQLYP DHRTTEITAF
601: IKKAAEYLEN MQTRDGSWYG NWGICFTYGT WFALAGLAAA GKTFNDCEAI RKGVQFLLAA QKDNGGWGES YLSCSKKIYI AQVGEISNVV QTAWALMGLI
701: HSGQAERDPI PLHRAAKLII NSQLESGDFP QQQATGVFLK NCTLHYAAYR NIHPLWALAE YRARVSLP
Arabidopsis Description
Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol,plasma membrane,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.