CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49432	Canola	cytosol	99.72	99.72
Bra039929.1-P	Field mustard	cytosol	95.46	95.46
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	52.82	76.04
CDY38925	Canola	cytosol, nucleus, plasma membrane	73.59	72.69
CDY25386	Canola	cytosol, plasma membrane, plastid	58.18	72.18
CDY25392	Canola	cytosol	72.9	69.65
CDY29797	Canola	cytosol	72.76	69.51
CDY72111	Canola	cytosol	33.15	58.5
KRH46975	Soybean	endoplasmic reticulum	59.83	57.09
KRH44692	Soybean	endoplasmic reticulum	59.28	56.56
KRH66676	Soybean	cytosol	48.97	56.51
KRH10719	Soybean	cytosol	35.21	56.14
CDX87420	Canola	cytosol	59.28	56.12
VIT_09s0054g01210.t01	Wine grape	cytosol	58.32	56.01
CDX79277	Canola	cytosol	52.54	55.6
CDY40048	Canola	cytosol	6.19	55.56
KRH66671	Soybean	cytosol	58.18	55.51
CDX88493	Canola	cytosol	59.28	55.4
CDX87419	Canola	cytosol	57.91	55.03
CDY57947	Canola	cytosol	57.63	54.63
CDX88494	Canola	endoplasmic reticulum, plasma membrane	57.5	53.87
CDY35103	Canola	mitochondrion	58.18	53.68
KRH11342	Soybean	cytosol	50.34	52.59
CDX85103	Canola	cytosol	7.43	50.94
CDY29789	Canola	cytosol	6.74	50.0
CDX89541	Canola	cytosol	9.9	48.98
KRH66677	Soybean	cytosol	8.94	47.79
CDY20917	Canola	cytosol	26.82	47.56
CDY50938	Canola	cytosol	49.66	47.31
CDX93093	Canola	cytosol	49.79	47.14
TraesCS7D01G004000.1	Wheat	cytosol	48.56	46.51
TraesCS4A01G495100.1	Wheat	cytosol	48.42	46.5
TraesCS7A01G003500.1	Wheat	cytosol	48.28	46.25
CDX77512	Canola	cytosol	49.38	46.2
CDX85104	Canola	cytosol	48.14	45.81
EES13537	Sorghum	cytosol	48.01	45.8
Zm00001d024337_P001	Maize	cytosol	44.57	44.81
Os08t0223900-00	Rice	cytosol	47.87	44.33
HORVU7Hr1G000400.1	Barley	cytosol, plastid	44.84	44.23
CDY20916	Canola	cytosol	14.99	43.08
CDY08878	Canola	cytosol	10.32	40.54
CDY63677	Canola	cytosol	4.54	34.74
CDY34478	Canola	cytosol, extracellular	17.74	34.58

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	GO:A0A078IT40	UniProt:A0A078IT40	EnsemblPlants:CDY52589	ProteinID:CDY52589
ProteinID:CDY52589.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0016853	GO:GO:0016866
EnsemblPlantsGene:GSBRNA2T00007357001	PFAM:PF13243	PFAM:PF13249	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C
InterPro:SQ_cyclase_N	SUPFAM:SSF48239	InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0004EE8A26

Description

BnaC08g49140DTerpene cyclase/mutase family member [Source:UniProtKB/TrEMBL;Acc:A0A078IT40]

Coordinates

chrLK033106:+:7794..12535

Molecular Weight (calculated)

83753.4 Da

IEP (calculated)

6.372

GRAVY (calculated)

-0.250

Length

727 amino acids

Sequence
(BLAST)

001: MWRLKIAAEA GDGPHLFSTN NYVGRQIWEF DANSGSPEER EEVDRARQNF SLNRSCFKAS ADLLWRMQFL REKKGVLYFA ALQADDGHWP AENSGSMFFN
101: APFFISLYIT GHLEKIFTPE HRKEFMRYLY NHQNDDGGWG IHVEGHSVMF CTVLNYICLR IFGMDQESVC ARARKWIIDH GGAAYTPLFG KIWLSVLGVY
201: DWSGCKPMPP EFWMLPLSSP FNGGTVWIYL RDIFMAVSYL YGKKFVATPT PLIAQLREEL YPQPYNKIKW SQARNLCAKE DLYYPQSFLQ DMFWKSVHVF
301: SENLLNQWPL NKLLRQRALR KTMEIIHYHD ESTRYITGGC VQKPFHMLAC WVDDPDGDYF KKHLARVSDF IWIGEDGLKI QSFGSQLWDT ALSLEVLLAA
401: DMDDEISSTL IKGYDFLKKS QLTENPPGDH RKMFREITKG AWTFSDRDQG WAVSDCTAES LECCLIFESM PMLGEKMDAE KLYDAVNLLL YFQSKNGGLA
501: VWEPARGNTW LEWLSPVEFA EDTVVELEYL ECTGSAIVAL VRFLEMFPGH RKEEVESFIR KGIKYIESFQ MPDGSWYGNW GVCFIFGTFN AVRGLVAAGK
601: TYSNCDAIRR AVRFLLDTQN AEGGWGESYL SCPIKKYTPL EGNKTNVVNT AQAMMGLIMG GQMERDPSPV HRAAKVLINS QLENGDFPQQ EIMGVFKMNL
701: LLHYPTYRNI FTLWALTYYT KALRLRM

Best Arabidopsis Sequence Match ( AT1G78500.1 )
(BLAST)

001: MWRLKIGAKG GDETHLFTTN NYTGRQTWEF DADACSPEEL AEVDEARQNF SINRSRFKIS ADLLWRMQFL REKKFEQKIP RVEIGDAENI TYKDAKTALR
101: RGILYFKALQ AEDGHWPAEN SGCLFFEAPF VICLYITGHL EKILTLEHRK ELLRYMYNHQ NEDGGWGIHV EGQSAMFCTV INYICLRILG VEADLDDIKG
201: SGCARARKWI LDHGGATYTP LIGKAWLSIL GVYDWSGCKP IPPEVWMLPT FSPFNGGTLW IYFRDIFMGV SYLYGKKFVA TPTPLILQLR EELYPQPYDK
301: ILWSQARNQC AKEDLYYPQS FLQEMFWKCV HILSENILNR WPCNKLIRQK ALRTTMELLH YQDEASRYFT GGCVPKPFHM LACWVEDPDG DYFKKHLARV
401: PDYIWIGEDG LKIQSFGSQL WDTAFSLQVM LAYQDVDDDD DEIRSTLIKG YSFLNKSQLT QNPPGDHRKM LKDIAKGGWT FSDQDQGWPV SDCTAESLEC
501: CLVFGSMPSE LIGEKMDVER LYDAVNLLLY FQSKNGGITV WEAARGRTWL EWLSPVEFME DTIVEHEYVE CTGSAIVALA RFLKEFPEHR REEVEKFIKN
601: AVKYIESFQM PDGSWYGNWG VCFMYGTFFA VRGLVAAGKT YQNCEPIRKA VQFILETQNV EGGWGESYLS CPNKKYTLLE GNRTNVVNTG QALMVLIMGG
701: QMERDPLPVH RAAKVLINSQ LDNGDFPQEE IMGVFKMNVM VHYATYRNIF TLWALTYYTK ALRVPLC

Arabidopsis Description

PEN6Seco-amyrin synthase [Source:UniProtKB/Swiss-Prot;Acc:Q9SYN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.