CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40048	Canola	cytosol	10.04	85.19
CDY57947	Canola	cytosol	93.89	84.09
CDX87419	Canola	cytosol	87.92	78.95
CDX88494	Canola	endoplasmic reticulum, plasma membrane	87.34	77.32
CDY72111	Canola	cytosol	43.38	72.33
CDY20917	Canola	cytosol	38.43	64.39
CDX87420	Canola	cytosol	70.31	62.89
CDX88493	Canola	cytosol	70.74	62.47
CDY35103	Canola	mitochondrion	71.32	62.18
CDY20916	Canola	cytosol	21.69	58.89
Solyc12g035460.1.1	Tomato	cytosol	18.49	56.44
Solyc12g035450.1.1	Tomato	cytosol, plasma membrane, plastid	13.83	55.23
CDY49432	Canola	cytosol	55.75	52.68
CDY52589	Canola	cytosol	55.6	52.54
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	38.43	52.28
CDY25386	Canola	cytosol, plasma membrane, plastid	44.54	52.22
CDY50938	Canola	cytosol	56.91	51.25
CDX93093	Canola	cytosol	57.21	51.17
CDX77512	Canola	cytosol	56.91	50.32
CDX85104	Canola	cytosol	55.9	50.26
CDX85103	Canola	cytosol	7.71	50.0
CDY38925	Canola	cytosol, nucleus, plasma membrane	50.95	47.55
HORVU7Hr1G000400.1	Barley	cytosol, plastid	50.66	47.22
TraesCS7D01G004000.1	Wheat	cytosol	51.97	47.04
CDY29797	Canola	cytosol	51.97	46.91
TraesCS4A01G495100.1	Wheat	cytosol	51.67	46.9
CDY25392	Canola	cytosol	51.53	46.52
TraesCS7A01G003500.1	Wheat	cytosol	51.38	46.51
CDY34478	Canola	cytosol, extracellular	25.18	46.38
EES13537	Sorghum	cytosol	50.36	45.41
CDY08878	Canola	cytosol	12.23	45.41
Os08t0223900-00	Rice	cytosol	51.82	45.35
Zm00001d024337_P001	Maize	cytosol	46.0	43.71
CDY63677	Canola	cytosol	5.39	38.95
CDY29789	Canola	cytosol	2.77	19.39
CDX89541	Canola	cytosol	4.08	19.05

Protein Annotations

Gene3D:1.50.10.20	MapMan:9.1.4.3	GO:A0A078CRB4	EnsemblPlants:CDX79277	ProteinID:CDX79277	ProteinID:CDX79277.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0016866	EnsemblPlantsGene:GSBRNA2T00131923001	PFAM:PF13243	PFAM:PF13249
ScanProsite:PS01074	PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	SUPFAM:SSF48239
InterPro:Squalene_cyclase	TIGRFAMs:TIGR01787	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0004EEE89C	SEG:seg

Description

BnaC06g20260D

Coordinates

chrLK031817:+:982881..986571

Molecular Weight (calculated)

78746.6 Da

IEP (calculated)

5.832

GRAVY (calculated)

-0.199

Length

687 amino acids

Sequence
(BLAST)

001: MFELIERTVF ERGEIRASDP AGVSFFSALQ ASDGHWPGEI TGPLFFLPPL VFCLYITGHL EKVFDEEHRK EMLRHVYCHQ NEDGGWGLHI ESKSIMFCTA
101: LNYICLRILG EGPNGGRDDA CKRARQWILD RGGVTYIPSW GKIWLSILGI YDWSGTNPMP PEIWLLPSFL PIHLAKTLCY CRMVYMPMSY LYGKRFVGPI
201: TPLILQLRDE LLLQPYEAIN WNKTRRLYAQ EDMYFPHPLV QDLVWDALYV FVEPFLTRWP LNKLVREKAC RLAMKHIHYE DENSHYITIG CVVKVLCMLA
301: CWIDNPDGDY FKKHLARIPD YMWVAEDGMK MQSFGSQLWD TGFAVQAILA SDLLDETSNV LKKGHDYIKL SQVRENPSGD FKSMYRHISK GAWTLSDRDH
401: GLQVSDCTAE ALKCCLLLST MPSEVVGQQL DPEQIYDSVN LLLSFQSKKG GVTAWEPVRA YEWIEFLNPT EFLANTVAER EYVECTSSVI QALVLFQQLY
501: PGHRTKEISR FIEKAVQFIE NEQTPDGSWY GNWGICFIYA TWFALDGLAA AGKTYENSLA MRKGVEFLLR TQKDDGGWGE SYLSCPEQRY IPSEGNQSNL
601: VQTAWAMLGL IHAGQTQRDP VPLHRAGKLI INSQMEDGDF PQQEIVGMFM KNCMMYYATY RNTFPLWALA EYRKAAFPNS STTSTAS

Best Arabidopsis Sequence Match ( AT1G78960.1 )
(BLAST)

001: MWKLKIGEGN GEDPYLFSSN NFVGRQTWEF DPKAGTPEER AAVEDARRNY LDNRPRVKGC SDLLWRMQFL KEAKFEQVIP PVKIDDGEGI TYKNATDALR
101: RAVSFYSALQ SSDGHWPAEI TGTLFFLPPL VFCFYITGHL EKIFDAEHRK EMLRHIYCHQ NEDGGWGLHI EGKSVMFCTV LNYICLRMLG EGPNGGRNNA
201: CKRARQWILD HGGVTYIPSW GKIWLSILGI YDWSGTNPMP PEIWLLPSFF PIHLGKTLCY TRMVYMPMSY LYGKRFVGPL TPLIMLLRKE LHLQPYEEIN
301: WNKARRLCAK EDMIYPHPLV QDLLWDTLHN FVEPILTNWP LKKLVREKAL RVAMEHIHYE DENSHYITIG CVEKVLCMLA CWIENPNGDH FKKHLARIPD
401: FMWVAEDGLK MQSFGSQLWD TVFAIQALLA CDLSDETDDV LRKGHSFIKK SQVRENPSGD FKSMYRHISK GAWTLSDRDH GWQVSDCTAE ALKCCMLLSM
501: MPAEVVGQKI DPEQLYDSVN LLLSLQGEKG GLTAWEPVRA QEWLELLNPT DFFTCVMAER EYVECTSAVI QALVLFKQLY PDHRTKEIIK SIEKGVQFIE
601: SKQTPDGSWH GNWGICFIYA TWFALSGLAA AGKTYKSCLA VRKGVDFLLA IQEEDGGWGE SHLSCPEQRY IPLEGNRSNL VQTAWAMMGL IHAGQAERDP
701: TPLHRAAKLI ITSQLENGDF PQQEILGVFM NTCMLHYATY RNIFPLWALA EYRKAAFATH QDL

Arabidopsis Description

LUP2Amyrin synthase LUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.