CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g035460.1.1	Tomato	cytosol	28.16	51.56
CDY20917	Canola	cytosol	50.24	50.49
CDY35103	Canola	mitochondrion	95.39	49.87
CDY08878	Canola	cytosol	20.15	44.86
CDX79277	Canola	cytosol	72.33	43.38
CDY34478	Canola	cytosol, extracellular	38.59	42.63
CDX87419	Canola	cytosol	75.0	40.39
CDY57947	Canola	cytosol	72.82	39.11
CDX88494	Canola	endoplasmic reticulum, plasma membrane	73.3	38.92
CDX87420	Canola	cytosol	72.33	38.8
CDX88493	Canola	cytosol	72.33	38.3
CDY25386	Canola	cytosol, plasma membrane, plastid	53.64	37.71
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	45.15	36.83
CDY49432	Canola	cytosol	58.74	33.29
CDY52589	Canola	cytosol	58.5	33.15
CDY63677	Canola	cytosol	7.52	32.63
CDX85103	Canola	cytosol	8.01	31.13
CDY50938	Canola	cytosol	57.52	31.06
CDX93093	Canola	cytosol	57.77	30.99
HORVU7Hr1G000400.1	Barley	cytosol, plastid	54.85	30.66
CDY38925	Canola	cytosol, nucleus, plasma membrane	54.13	30.3
CDX85104	Canola	cytosol	55.83	30.1
TraesCS4A01G495100.1	Wheat	cytosol	55.1	29.99
EES13537	Sorghum	cytosol	55.34	29.92
CDX77512	Canola	cytosol	56.31	29.86
TraesCS7A01G003500.1	Wheat	cytosol	54.13	29.38
CDY25392	Canola	cytosol	54.13	29.3
TraesCS7D01G004000.1	Wheat	cytosol	53.88	29.25
Solyc12g035450.1.1	Tomato	cytosol, plasma membrane, plastid	12.14	29.07
Os08t0223900-00	Rice	cytosol	54.85	28.79
CDY29797	Canola	cytosol	52.91	28.65
Zm00001d024337_P001	Maize	cytosol	47.33	26.97
CDX89541	Canola	cytosol	2.91	8.16
CDY40048	Canola	cytosol	0.73	3.7
CDY20916	Canola	cytosol	1.94	3.16
CDY29789	Canola	cytosol	0.73	3.06

Protein Annotations

EnsemblPlants:CDY72111	EnsemblPlantsGene:GSBRNA2T00024929001	Gene3D:1.50.10.20	GO:A0A078K2S2	GO:GO:0003674	GO:GO:0003824
GO:GO:0016866	InterPro:SQ_cyclase_C	InterPro:Squalene_cyclase	InterPro:Terpene_synthase_CS	InterPro:Terpenoid_cyclase/PrenylTrfase	PANTHER:PTHR11764
PANTHER:PTHR11764:SF16	PFAM:PF13243	ProteinID:CDY72111	ProteinID:CDY72111.1	ScanProsite:PS01074	SUPFAM:SSF48239
TIGRFAMs:TIGR01787	UniParc:UPI0004EDEEB2	UniProt:A0A078K2S2	MapMan:9.1.4.3	:	:

Description

BnaCnng76020DBnaCnng76020D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K2S2]

Coordinates

chrLK049009:-:26..2090

Molecular Weight (calculated)

46947.8 Da

IEP (calculated)

5.103

GRAVY (calculated)

-0.384

Length

412 amino acids

Sequence
(BLAST)

001: MYYPHPSIQD LVWDSLHVFG EPLLTRWPLN KLVREKALRV AMEYIHYEDE NSRYINIGCA GKAMCVLACW VEDPNGEYFK KHLARVPDYF WIAEDGMKVQ
101: VNFGSQLWDT SLAIQALLAS NLSDETADVL KKGHDFIKRS QIRENPSGDF KKMNRHISKG GWTFSDRDQG WNVSDCSAEA FKCCLLLSKM PPDVVGPKME
201: PEQLYDSVNL LLSYQSENGG MTAWEPARGY GWLELFNPTE MLADLVIERE YVECTSSVIQ ALIMFKKLYP DHRTREIDRT IEKAVQFIEN TQEADGSWYG
301: SWGVCYTYAT WFALEGLASV GKTYENCLAM REGVGFLLKK QNSSGGWGES YLSCSEKRYI ELEGGRSNLV QTAWALMGLI KTGQAERDPL PLHRAAKLII
401: NSQLENGDYP QQ

Best Arabidopsis Sequence Match ( AT1G78960.1 )
(BLAST)

001: MWKLKIGEGN GEDPYLFSSN NFVGRQTWEF DPKAGTPEER AAVEDARRNY LDNRPRVKGC SDLLWRMQFL KEAKFEQVIP PVKIDDGEGI TYKNATDALR
101: RAVSFYSALQ SSDGHWPAEI TGTLFFLPPL VFCFYITGHL EKIFDAEHRK EMLRHIYCHQ NEDGGWGLHI EGKSVMFCTV LNYICLRMLG EGPNGGRNNA
201: CKRARQWILD HGGVTYIPSW GKIWLSILGI YDWSGTNPMP PEIWLLPSFF PIHLGKTLCY TRMVYMPMSY LYGKRFVGPL TPLIMLLRKE LHLQPYEEIN
301: WNKARRLCAK EDMIYPHPLV QDLLWDTLHN FVEPILTNWP LKKLVREKAL RVAMEHIHYE DENSHYITIG CVEKVLCMLA CWIENPNGDH FKKHLARIPD
401: FMWVAEDGLK MQSFGSQLWD TVFAIQALLA CDLSDETDDV LRKGHSFIKK SQVRENPSGD FKSMYRHISK GAWTLSDRDH GWQVSDCTAE ALKCCMLLSM
501: MPAEVVGQKI DPEQLYDSVN LLLSLQGEKG GLTAWEPVRA QEWLELLNPT DFFTCVMAER EYVECTSAVI QALVLFKQLY PDHRTKEIIK SIEKGVQFIE
601: SKQTPDGSWH GNWGICFIYA TWFALSGLAA AGKTYKSCLA VRKGVDFLLA IQEEDGGWGE SHLSCPEQRY IPLEGNRSNL VQTAWAMMGL IHAGQAERDP
701: TPLHRAAKLI ITSQLENGDF PQQEILGVFM NTCMLHYATY RNIFPLWALA EYRKAAFATH QDL

Arabidopsis Description

LUP2Amyrin synthase LUP2 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWT0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.