CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40048	Canola	cytosol	9.84	76.54
KRH10719	Soybean	cytosol	52.38	72.37
KRH46975	Soybean	endoplasmic reticulum	85.87	71.0
KRH44692	Soybean	endoplasmic reticulum	85.56	70.73
KRH66671	Soybean	cytosol	83.02	68.64
KRH11342	Soybean	cytosol	73.81	66.81
Solyc12g006520.1.1	Tomato	cytosol	71.27	64.33
PGSC0003DMT400048796	Potato	cytosol	73.81	61.1
Solyc12g006530.1.1	Tomato	cytosol	73.33	60.71
PGSC0003DMT400048795	Potato	cytosol	68.41	58.8
PGSC0003DMT400051584	Potato	cytosol	70.32	58.21
Solyc12g006510.1.1	Tomato	cytosol	68.89	57.56
PGSC0003DMT400043981	Potato	cytosol	55.56	57.38
VIT_09s0054g01420.t01	Wine grape	cytosol, extracellular, golgi	9.84	56.88
Bra035809.1-P	Field mustard	cytosol	50.63	54.53
CDY25386	Canola	cytosol, plasma membrane, plastid	50.63	54.44
CDX89540	Canola	endoplasmic reticulum, golgi, plastid	43.02	53.66
KRH13217	Soybean	cytosol	51.9	52.4
KRG92127	Soybean	cytosol	60.32	49.61
CDY49432	Canola	cytosol	56.67	49.11
CDY52589	Canola	cytosol	56.51	48.97
KRH74134	Soybean	endoplasmic reticulum	58.57	48.74
KRH41389	Soybean	cytosol	58.25	48.1
KRH74136	Soybean	cytosol	57.3	47.07
AT1G78500.2	Thale cress	cytosol	57.3	47.07
Bra039929.1-P	Field mustard	cytosol	54.13	46.91
AT5G48010.2	Thale cress	cytosol	56.98	46.87
HORVU7Hr1G000400.1	Barley	cytosol, plastid	54.76	46.81
CDY38925	Canola	cytosol, nucleus, plasma membrane	53.81	46.06
Bra032185.1-P	Field mustard	cytosol, plasma membrane, plastid	55.56	46.05
AT5G36150.1	Thale cress	cytosol	55.56	46.05
AT4G15340.1	Thale cress	mitochondrion	55.87	45.95
TraesCS4A01G495100.1	Wheat	cytosol	54.92	45.71
AT3G29255.1	Thale cress	cytosol	50.95	45.47
CDY29797	Canola	cytosol	54.92	45.47
CDY25392	Canola	cytosol	54.92	45.47
AT4G15370.1	Thale cress	cytosol	54.6	45.32
AT5G42600.1	Thale cress	cytosol	54.6	45.2
TraesCS7D01G004000.1	Wheat	cytosol	54.44	45.19
TraesCS7A01G003500.1	Wheat	cytosol	53.97	44.8
EES13537	Sorghum	cytosol	53.17	43.96
CDY08878	Canola	cytosol	12.54	42.7
Os08t0223900-00	Rice	cytosol	53.17	42.68
Zm00001d024337_P001	Maize	cytosol	48.57	42.32
CDY63677	Canola	cytosol	5.24	34.74
Solyc12g035440.1.1	Tomato	cytosol	3.17	22.99
CDX89541	Canola	cytosol	2.38	10.2
KRH38081	Soybean	cytosol	0.48	4.05
Bra035810.1-P	Field mustard	cytosol, mitochondrion	0.63	2.86
KRH66677	Soybean	cytosol	0.48	2.21

Protein Annotations

EMBL:ACUP02002003	EnsemblPlants:KRH66676	EnsemblPlantsGene:GLYMA_03G121500	Gene3D:1.50.10.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0016853	GO:GO:0016866	InterPro:SQ_cyclase_C	InterPro:SQ_cyclase_N	InterPro:Squalene_cyclase	InterPro:Terpenoid_cyclase/PrenylTrfase
PANTHER:PTHR11764	PANTHER:PTHR11764:SF16	PFAM:PF13243	PFAM:PF13249	ProteinID:KRH66676	ProteinID:KRH66676.1
SUPFAM:SSF48239	TIGRFAMs:TIGR01787	UniParc:UPI000294E73E	UniProt:K7KEK9	MapMan:9.1.4.3	:

Description

hypothetical protein

Coordinates

chr3:-:33386299..33392831

Molecular Weight (calculated)

72170.7 Da

IEP (calculated)

6.934

GRAVY (calculated)

-0.264

Length

630 amino acids

Sequence
(BLAST)

001: MYITGHLDSV FPEEYKKEIL RYMYYHQNED GGWGLHIEGH SNMFCTALNY ICMRVLGEGP NGGHDNACAR ARKWIHDHGG VTHIPSWGKT WLSILGVYDW
101: YGSKPVPPEF WVLPSFLPMH PSKIWCYCRL TYLPMSYLYG KRFVGPITPL ILQLREELFT QPYEKVNWKK ARNQCAKEDR YHPHSLIQDL VWDSLYIFIE
201: PLLTRWPFNK LVREKALQVT MKHILYEDEN SRYITIGCVE KALYMLACWV EDPNGDAFKK HLARVPDYLW VSEDGMAMQS FGSQGWDASL VIQALLATNL
301: MEEIGPTLAK AHDFIKKTQV KDDPLGDFKS MYRHISKGSW TFSDQDQGWQ VSDCTAETLN CCLLLSILPS EIVGEKMEPQ RLYDSVNILL SLQSRKGGLA
401: AWEPSGTQEW LEILNPTEFL GNIVVEHDYA ECTGSAIQAL VLFKKLYPRH REKEIKNSIA NAVQFLEDTQ TANGSWYGSW GVCYIYGTWF ALRGLAAAGK
501: TYTNCAAIRK GVKFLLSTQK EDGGWGESYL SCPKQIYVPL EGSRSTVVHT AWALLGLILA GQAERDTTSL HRAAKLLINS QLKEGDWPQQ ELTGVFNRTC
601: MLHYPMYRNI YPMWALAEYR RLVPLPSTEV

Best Arabidopsis Sequence Match ( AT1G78950.1 )
(BLAST)

001: MWRLKIGEGN GDDPYLFTTN NFAGRQTWEF DPDGGSPEER HSVVEARRIF YDNRFHVKAS SDLLWRMQFL REKKFEQRIA PVKVEDSEKV TFETATSALR
101: RGIHFFSALQ ASDGHWPAEN AGPLFFLPPL VFCLYITGHL DEVFTSEHRK EILRYIYCHQ KEDGGWGLHI EGHSTMFCTT LNYICMRILG ESPDGGHDNA
201: CGRAREWILS HGGVTYIPSW GKTWLSILGV FDWSGSNPMP PEFWILPSFF PVHPAKMWSY CRMVYLPMSY LYGKRFVGPI TSLILQLRKE LYLQPYEEIN
301: WMKVRHLCAK EDTYYPRPLV QELVWDSLYI FAEPFLARWP FNKLLREKAL QLAMKHIHYE DENSRYITIG CVEKVLCMLA CWVEDPNGDY FKKHLSRISD
401: YLWMAEDGMK MQSFGSQLWD TGFAMQALLA SNLSSEISDV LRRGHEFIKN SQVGENPSGD YKSMYRHISK GAWTFSDRDH GWQVSDCTAH GLKCCLLFSM
501: LAPDIVGPKQ DPERLHDSVN ILLSLQSKNG GMTAWEPAGA PKWLELLNPT EMFSDIVIEH EYSECTSSAI QALSLFKQLY PDHRTTEITA FIKKAAEYLE
601: NMQTRDGSWY GNWGICFTYG TWFALAGLAA AGKTFNDCEA IRKGVQFLLA AQKDNGGWGE SYLSCSKKIY IAQVGEISNV VQTAWALMGL IHSGQAERDP
701: IPLHRAAKLI INSQLESGDF PQQQATGVFL KNCTLHYAAY RNIHPLWALA EYRARVSLP

Arabidopsis Description

Terpenoid cyclases family protein [Source:TAIR;Acc:AT1G78950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.